RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CHRM3P20309 590 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 ZEB1P37275 1124 aaPredicted RBP4.97□□□□□ -1.61
VPS29-205ENST00000548539 TNFAIP2Q03169 654 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 SLFN5Q08AF3 891 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 ZRSR2Q15696 482 aaKnown RBP4.97□□□□□ -1.61
VPS29-205ENST00000548539 SLC35G1Q2M3R5 365 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 ARL13BQ3SXY8 428 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 TUBB8Q3ZCM7 444 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 GGT6Q6P531 493 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 CCDC174Q6PII3 467 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 SLC30A10Q6XR72 485 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 RAPGEF4Q8WZA2 1011 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 IQCDQ96DY2 449 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 MARS2Q96GW9 593 aaKnown RBP4.97□□□□□ -1.61
VPS29-205ENST00000548539 NEU1Q99519 415 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 SELENOOQ9BVL4 669 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 MS4A7Q9GZW8 240 aaPredicted RBP4.97□□□□□ -1.61
VPS29-205ENST00000548539 FAM30AQ9NZY2 134 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 XPR1Q9UBH6 696 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 HDAC9Q9UKV0 1011 aa4.97□□□□□ -1.61
VPS29-205ENST00000548539 AATKQ6ZMQ8 1374 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 A0A087WWL8 130 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 CENPVL1A0A0U1RR11 272 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 A0A1W2PPC4 97 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 TRIM24O15164 1050 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 RASSF9O75901 435 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 THP07101 528 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 ANXA2P07355 339 aaKnown RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 CKBP12277 381 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 IL1R1P14778 569 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 FGFR2P21802 821 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 MGAT1P26572 445 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 APOBEC3AP31941 199 aaPredicted RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 HALP42357 657 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 TECP42680 631 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 HSPA7P48741 367 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 CARSP49589 748 aaKnown RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 POU6F2P78424 691 aaPredicted RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 NHLH2Q02577 135 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 STARD3Q14849 445 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 ELF2Q15723 593 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 MPEG1Q2M385 716 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 ERCC6LQ2NKX8 1250 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 INO80DQ53TQ3 878 aaPredicted RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 DCAF17Q5H9S7 520 aaPredicted RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 TSHZ3Q63HK5 1081 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 DRICH1Q6PGQ1 229 aaPredicted RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 ZDHHC24Q6UX98 284 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 SYTL1Q8IYJ3 562 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 LCORLQ8N3X6 602 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 DDX17Q92841 729 aaKnown RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 ZNF566Q969W8 418 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 MYEOVQ96EZ4 313 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 LRRC46Q96FV0 321 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 ZSWIM1Q9BR11 485 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 CNPPD1Q9BV87 410 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 TTYH3Q9C0H2 523 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 CHST8Q9H2A9 424 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 PRDM13Q9H4Q3 707 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 AS3MTQ9HBK9 375 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 A1CFQ9NQ94 594 aaKnown RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 MAGED2Q9UNF1 606 aaPredicted RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 CLCA2Q9UQC9 943 aa4.96□□□□□ -1.62
VPS29-205ENST00000548539 USP15Q9Y4E8 981 aaPredicted RBP4.96□□□□□ -1.62
VPS29-205ENST00000548539 A0A087WV62 115 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 CCDC78A2IDD5 438 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 POLRMTO00411 1230 aaKnown RBP4.95□□□□□ -1.62
VPS29-205ENST00000548539 PIP5K1CO60331 668 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 CHEK2O96017 543 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 KLRC1P26715 233 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 CHKAP35790 457 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 AVPR1BP47901 424 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 RNASE9P60153 205 aaKnown RBP4.95□□□□□ -1.62
VPS29-205ENST00000548539 MXRA7P84157 204 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 BOP1Q14137 746 aaKnown RBP4.95□□□□□ -1.62
VPS29-205ENST00000548539 AMOTQ4VCS5 1084 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 FAM160B1Q5W0V3 765 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.95□□□□□ -1.62
VPS29-205ENST00000548539 RNF44Q7L0R7 432 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 CFAP52Q8N1V2 620 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 ANKRD42Q8N9B4 389 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 NUP133Q8WUM0 1156 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 BRI3BPQ8WY22 251 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 C18orf8Q96DM3 657 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 SMOQ99835 787 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 COLEC11Q9BWP8 271 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 SERHL2Q9H4I8 314 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 SERHLQ9NQF3 203 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 VSX1Q9NZR4 365 aaPredicted RBP4.95□□□□□ -1.62
VPS29-205ENST00000548539 MYO1AQ9UBC5 1043 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 ZNF212Q9UDV6 495 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 MID2Q9UJV3 735 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 MAN2B2Q9Y2E5 1009 aa4.95□□□□□ -1.62
VPS29-205ENST00000548539 MORC2Q9Y6X9 1032 aaPredicted RBP4.95□□□□□ -1.62
VPS29-205ENST00000548539 MBD3L4A6NDZ8 208 aaPredicted RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 MBD3L3A6NE82 208 aaPredicted RBP4.94□□□□□ -1.62
VPS29-205ENST00000548539 ZNF185O15231 689 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 THAP12O43422 761 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 MYL4P12829 197 aa4.94□□□□□ -1.62
VPS29-205ENST00000548539 FDXRP22570 491 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms