RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CPA6Q8N4T0 437 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 OSCP1Q8WVF1 389 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 CD101Q93033 1021 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 CYP2S1Q96SQ9 504 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 AGO2Q9UKV8 859 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 CACNA1GO43497 2377 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 NOL4O94818 638 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 RHOBTB1O94844 696 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 WNT7BP56706 349 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 FAM160A1Q05DH4 1040 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 USP4Q13107 963 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 DDR2Q16832 855 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 CCDC142Q17RM4 750 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 EML3Q32P44 896 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 SCARA3Q6AZY7 606 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 UNQ6494/PRO21346Q6UXR6 183 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 LEO1Q8WVC0 666 aaPredicted RBP19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 TRMT2BQ96GJ1 504 aaKnown RBP19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 MYRFLQ96LU7 910 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 AK8Q96MA6 479 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 PKMYT1Q99640 499 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 DUS2Q9NX74 493 aaKnown RBP19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 INVSQ9Y283 1065 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 WNT6Q9Y6F9 365 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 BAHCC1Q9P281 2608 aa19.18■□□□□ 0.66
CLSTN3-214ENST00000542663 MYO18AQ92614 2054 aaKnown RBP19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 ANTXRLA6NF34 631 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 SLC26A4O43511 780 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 CYP2F1P24903 491 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 ADSSP30520 456 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 TSPY1Q01534 308 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 POU5F1Q01860 360 aaKnown RBP19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 NFE2Q16621 373 aaPredicted RBP19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 PMS2CLQ68D20 193 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 PDCL2Q8N4E4 241 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 RAD54LQ92698 747 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 ACDQ96AP0 544 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 CALML4Q96GE6 196 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 TMEM121BQ9BXQ6 578 aaPredicted RBP19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 ST6GALNAC4Q9H4F1 302 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 ZHX3Q9H4I2 956 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 UXTQ9UBK9 157 aaPredicted RBP19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 L1RE1Q9UN81 338 aa19.17■□□□□ 0.66
CLSTN3-214ENST00000542663 IGF2RP11717 2491 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 EIF5BO60841 1220 aaKnown RBP19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 PLCG1P19174 1290 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 ACAT1P24752 427 aaKnown RBP19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 GBP1P32455 592 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 DGKEP52429 567 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 ZNF252P-AS1Q0IIN9 211 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 PSMD2Q13200 908 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 SLFN12LQ6IEE8 588 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 ZSWIM2Q8NEG5 633 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 ATP2A3Q93084 1043 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 ZNF560Q96MR9 790 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 TPSD1Q9BZJ3 242 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 TMEM206Q9H813 350 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 TRPC7Q9HCX4 862 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 ABCB6Q9NP58 842 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 GCNT4Q9P109 453 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 ZMIZ1Q9ULJ6 1067 aa19.16■□□□□ 0.66
CLSTN3-214ENST00000542663 PCNX2A6NKB5 2137 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 PATE3B3GLJ2 98 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 CDX4O14627 284 aaPredicted RBP19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 HCRTO43612 131 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 TOP3BO95985 862 aaKnown RBP19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 KRT18P05783 430 aaKnown RBP19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 USP17L7P0C7H9 530 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 SPINK2P20155 84 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 ABCD1P33897 745 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 UBA7P41226 1012 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 IFNAR2P48551 515 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 GRIN1Q05586 938 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 INTS6LQ5JSJ4 861 aaKnown RBP19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 SH3PXD2AQ5TCZ1 1133 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 NT5DC4Q86YG4 428 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 TTC16Q8NEE8 873 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 CXorf38Q8TB03 319 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 EXOC4Q96A65 974 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 FAM84AQ96KN4 292 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 ACBD6Q9BR61 282 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 LINC00597Q9H2U6 94 aa19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 DDX43Q9NXZ2 648 aaKnown RBP19.15■□□□□ 0.66
CLSTN3-214ENST00000542663 TRAV19A0A0A6YYK7 116 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 C2orf78A6NCI8 922 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 K7EQS6 105 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 TBCAO75347 108 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 PPP1R37O75864 691 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 IL18RAPO95256 599 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 ITGB3P05106 788 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 CKMP06732 381 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 BCKDHBP21953 392 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 POLR2BP30876 1174 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 OPRD1P41143 372 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 PNPLA4P41247 253 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 RPL10AP62906 217 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 ZXDBP98169 803 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 FOXC1Q12948 553 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 GAB4Q2WGN9 574 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 DAB2IPQ5VWQ8 1189 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms