RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 ZMYND8Q9ULU4 1186 aaPredicted RBP8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 SH3GLB1Q9Y371 365 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 PFDN1O60925 122 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 ADRB2P07550 413 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 CCDC166P0CW27 439 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 ALDH3A1P30838 453 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 HOXC13P31276 330 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 RNASELQ05823 741 aaKnown RBP8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 MTMR3Q13615 1198 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 TARBP2Q15633 366 aaKnown RBP8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 GJB7Q6PEY0 223 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 SLC2A7Q6PXP3 512 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 DAAM2Q86T65 1068 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 TEX9Q8N6V9 391 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 SMC1BQ8NDV3 1235 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 MCPH1Q8NEM0 835 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 SHCBP1Q8NEM2 672 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 MAIP1Q8WWC4 291 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 ZNF317Q96PQ6 595 aaPredicted RBP8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 FNBP1Q96RU3 617 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 PCIF1Q9H4Z3 704 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 DHX33Q9H6R0 707 aaKnown RBP8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 ZNF302Q9NR11 478 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 RHBDL2Q9NX52 303 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 ARHGAP28Q9P2N2 729 aa8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 NKX1-2Q9UD57 310 aaPredicted RBP8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 NOSIPQ9Y314 301 aaKnown RBP8.41□□□□□ -1.06
PDLIM5-221ENST00000542407 ASAP2O43150 1006 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 EXOC3O60645 756 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 KCNJ13O60928 360 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 CYP2C8P10632 490 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 ALADP13716 330 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 ECHS1P30084 290 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 PRKCIP41743 596 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 SLCO1A2P46721 670 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 PEX5P50542 639 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 COPS2P61201 443 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 IGBP1P78318 339 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 DMP1Q13316 513 aaPredicted RBP8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 CUL1Q13616 776 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 EMC2Q15006 297 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 LRRC14Q15048 493 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 MAP1SQ66K74 1059 aaPredicted RBP8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 CAPN12Q6ZSI9 719 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 USP38Q8NB14 1042 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 IFT74Q96LB3 600 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 NSRP1Q9H0G5 558 aaKnown RBP8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 PORCNQ9H237 461 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 WDR35Q9P2L0 1181 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 AMACRQ9UHK6 382 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 PLXNB2O15031 1838 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 DENND3A2RUS2 1198 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 ZNF254O75437 659 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 PPP3CAQ08209 521 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 RAPGEF1Q13905 1077 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 LY6KQ17RY6 165 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 SLC9C1Q4G0N8 1177 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 METTL7BQ6UX53 244 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 PIGWQ7Z7B1 504 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 FBXL18Q96ME1 805 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 MMP19Q99542 508 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 DDX23Q9BUQ8 820 aaKnown RBP8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 POLR3FQ9H1D9 316 aaPredicted RBP8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 MROH8Q9H579 483 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 MLXIPLQ9NP71 852 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 ATAD3AQ9NVI7 634 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 KCTD5Q9NXV2 234 aa8.4□□□□□ -1.06
PDLIM5-221ENST00000542407 PMM2O15305 246 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 CLASP2O75122 1294 aaKnown RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 SKIP12755 728 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 KLRC1P26715 233 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 GBP1P32455 592 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 ARL2P36404 184 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 POLD2P49005 469 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 IFI35P80217 286 aaPredicted RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 GSTM4Q03013 218 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 VAC14Q08AM6 782 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 RPS6KA1Q15418 735 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 ASIC2Q16515 512 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 SLC18A3Q16572 532 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 MTERF2Q49AM1 385 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 EPC2Q52LR7 807 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 ZNF362Q5T0B9 420 aaPredicted RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 CCDC62Q6P9F0 684 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 INTS8Q75QN2 995 aaKnown RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 ZNF571Q7Z3V5 609 aaPredicted RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 XXYLT1Q8NBI6 393 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 SVIPQ8NHG7 77 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 ASAP3Q8TDY4 903 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 NELL1Q92832 810 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 TBC1D20Q96BZ9 403 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 LBHD1Q9BQE6 289 aaPredicted RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 SYT11Q9BT88 431 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 EIF2AQ9BY44 585 aaKnown RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 CELF4Q9BZC1 486 aaKnown RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 INTS2Q9H0H0 1204 aaKnown RBP8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 RAB17Q9H0T7 212 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 AZI2Q9H6S1 392 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 KRT82Q9NSB4 513 aa8.4□□□□□ -1.07
PDLIM5-221ENST00000542407 USP20Q9Y2K6 914 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms