RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ASAP2O43150 1006 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 PSTPIP1O43586 416 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 KLRC2P26717 231 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 SCTRP47872 440 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 ZNF132P52740 706 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 TFDP1Q14186 410 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 ANKRD20A8PQ5CZ79 823 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 SH3D19Q5HYK7 790 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 EMC10Q5UCC4 262 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 GRK7Q8WTQ7 553 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 TBC1D31Q96DN5 1066 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 SAMD15Q9P1V8 674 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 E5RJQ4 531 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 MICAL2O94851 1124 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 PIGRP01833 764 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 MIPP30301 263 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 CDKN2BP42772 138 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 EFNA5P52803 228 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 NDST1P52848 882 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 MCL1Q07820 350 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 SLC10A6Q3KNW5 377 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 ZC3H12AQ5D1E8 599 aaKnown RBP17.79■□□□□ 0.44
USP28-208ENST00000540438 TRNP1Q6NT89 227 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.79■□□□□ 0.44
USP28-208ENST00000540438 SLC4A11Q8NBS3 891 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 CLEC4CQ8WTT0 213 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 C18orf25Q96B23 403 aaPredicted RBP17.79■□□□□ 0.44
USP28-208ENST00000540438 FAM81BQ96LP2 452 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 SGIP1Q9BQI5 828 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 GOLGA2P5Q9HBQ8 144 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 SLC40A1Q9NP59 571 aa17.79■□□□□ 0.44
USP28-208ENST00000540438 TJP3O95049 919 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 CYP3A5P20815 502 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 FOXN2P32314 431 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 CTCFP49711 727 aaPredicted RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 MXD4Q14582 209 aaPredicted RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 C9orf131Q5VYM1 1079 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 ZPBP2Q6X784 338 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 CEP57Q86XR8 500 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 HPDLQ96IR7 371 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 TGS1Q96RS0 853 aaKnown RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 PEBP4Q96S96 227 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 SNX9Q9Y5X1 595 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 MYCNP04198 464 aaPredicted RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 LGALS2P05162 132 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 F7P08709 466 aaPredicted RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 TFDP3Q5H9I0 405 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 HIBCHQ6NVY1 386 aaPredicted RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 TRMT10CQ7L0Y3 403 aaKnown RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 CNOT10Q9H9A5 744 aaKnown RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.78■□□□□ 0.44
USP28-208ENST00000540438 CHMP2BQ9UQN3 213 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 STK38LQ9Y2H1 464 aa17.78■□□□□ 0.44
USP28-208ENST00000540438 MYO18AQ92614 2054 aaKnown RBP17.78■□□□□ 0.44
USP28-208ENST00000540438 A0A0G2JLL6 359 aaPredicted RBP17.77■□□□□ 0.44
USP28-208ENST00000540438 ADORA2AP29274 412 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 PRRT2Q7Z6L0 340 aaPredicted RBP17.77■□□□□ 0.44
USP28-208ENST00000540438 ERO1BQ86YB8 467 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 KIF12Q96FN5 646 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 RUNDC3BQ96NL0 473 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 PGLYRP2Q96PD5 576 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 MGAMO43451 1857 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 UBOX5O94941 541 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 NPTXRO95502 500 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 CALB1P05937 261 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 CDH6P55285 790 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 CLUL1Q15846 466 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 CCDC62Q6P9F0 684 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 TAOK1Q7L7X3 1001 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 RCOR2Q8IZ40 523 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 RSAD2Q8WXG1 361 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 RMDN2Q96LZ7 410 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 CEP41Q9BYV8 373 aa17.77■□□□□ 0.44
USP28-208ENST00000540438 ADARB2Q9NS39 739 aaKnown RBP17.77■□□□□ 0.44
USP28-208ENST00000540438 MAGED2Q9UNF1 606 aaPredicted RBP17.77■□□□□ 0.44
USP28-208ENST00000540438 FAM155BO75949 473 aa17.77■□□□□ 0.43
USP28-208ENST00000540438 CETN2P41208 172 aa17.77■□□□□ 0.43
USP28-208ENST00000540438 PTPN11Q06124 597 aaPredicted RBP17.77■□□□□ 0.43
USP28-208ENST00000540438 NOL9Q5SY16 702 aaKnown RBP17.77■□□□□ 0.43
USP28-208ENST00000540438 ZNF618Q5T7W0 954 aa17.77■□□□□ 0.43
USP28-208ENST00000540438 ADPGKQ9BRR6 497 aa17.77■□□□□ 0.43
USP28-208ENST00000540438 SNTG2Q9NY99 539 aa17.77■□□□□ 0.43
USP28-208ENST00000540438 A8MUI8 341 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 RPA3P35244 121 aaPredicted RBP17.76■□□□□ 0.43
USP28-208ENST00000540438 OVGP1Q12889 678 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 TRIM72Q6ZMU5 477 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 ANKRD13AQ8IZ07 590 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 TMPRSS4Q9NRS4 437 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 GRID1Q9ULK0 1009 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 C22orf31O95567 290 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 PDGFRAP16234 1089 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 GCAP28676 217 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 WDR4P57081 412 aaKnown RBP17.76■□□□□ 0.43
USP28-208ENST00000540438 ZNF200P98182 395 aaPredicted RBP17.76■□□□□ 0.43
USP28-208ENST00000540438 XYLT1Q86Y38 959 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 IGDCC3Q8IVU1 814 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 UBR7Q8N806 425 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 SPATA18Q8TC71 538 aa17.76■□□□□ 0.43
USP28-208ENST00000540438 EIF2AQ9BY44 585 aaKnown RBP17.76■□□□□ 0.43
USP28-208ENST00000540438 DPEP3Q9H4B8 488 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms