RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 RGS7BPQ6MZT1 257 aaPredicted RBP4.52□□□□□ -1.69
VPS13A-213ENST00000539950 NAPRTQ6XQN6 538 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 YTHDF3Q7Z739 585 aaKnown RBP4.52□□□□□ -1.69
VPS13A-213ENST00000539950 NEK8Q86SG6 692 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 GLG1Q92896 1179 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 PTDSS2Q9BVG9 487 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 QTRT1Q9BXR0 403 aaKnown RBP4.52□□□□□ -1.69
VPS13A-213ENST00000539950 ARMT1Q9H993 441 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 SH2B3Q9UQQ2 575 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 A1L4Q6 167 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 hCG_1984214I3L0E3 225 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 ONECUT2O95948 504 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 GRPP07492 148 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 KCNJ5P48544 419 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 TUBA4AP68366 448 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 ETFDHQ16134 617 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 SUPT20HL1Q3ZLR7 823 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 PCID2Q5JVF3 399 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 LCE1AQ5T7P2 110 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 C11orf87Q6NUJ2 197 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 ZNF804AQ7Z570 1209 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 WDR53Q7Z5U6 358 aaPredicted RBP4.51□□□□□ -1.69
VPS13A-213ENST00000539950 GRAMD1CQ8IYS0 662 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 LRRC71Q8N4P6 559 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 HPS3Q969F9 1004 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 R3HDM4Q96D70 268 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 CDK5RAP3Q96JB5 506 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 CGRRF1Q99675 332 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 FSD1LQ9BXM9 530 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 SEMA4CQ9C0C4 833 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 TCF7L1Q9HCS4 588 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 IP6K2Q9UHH9 426 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 NDRG4Q9ULP0 352 aaKnown RBP4.51□□□□□ -1.69
VPS13A-213ENST00000539950 BTBD3Q9Y2F9 522 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 MRPS17Q9Y2R5 130 aaKnown RBP4.51□□□□□ -1.69
VPS13A-213ENST00000539950 PLEKHM1Q9Y4G2 1056 aa4.51□□□□□ -1.69
VPS13A-213ENST00000539950 KRTAP29-1A8MX34 341 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-213ENST00000539950 PRRT4C9JH25 899 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 ERC2O15083 957 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 PF4V1P10720 104 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 CERS1P27544 350 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 NEK2P51955 445 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 PDE1AP54750 535 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 ZNF267Q14586 743 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-213ENST00000539950 AMOTQ4VCS5 1084 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 ATAT1Q5SQI0 421 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 SLC18B1Q6NT16 456 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 CHSY1Q86X52 802 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 ZNF366Q8N895 744 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 CYP2W1Q8TAV3 490 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 HOOK2Q96ED9 719 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 MAP3K14Q99558 947 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 NUP88Q99567 741 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-213ENST00000539950 GLOD4Q9HC38 313 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 NRIP3Q9NQ35 241 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 XPR1Q9UBH6 696 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 STXBP5LQ9Y2K9 1186 aa4.5□□□□□ -1.69
VPS13A-213ENST00000539950 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.5□□□□□ -1.69
VPS13A-213ENST00000539950 MYO1FO00160 1098 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 PPP6CO00743 305 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 ITGB6P18564 788 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 SFPQP23246 707 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS13A-213ENST00000539950 VIPR2P41587 438 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 UCP3P55916 312 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 E2F2Q14209 437 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 MORN5Q5VZ52 161 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 PARS2Q7L3T8 475 aaKnown RBP4.49□□□□□ -1.69
VPS13A-213ENST00000539950 ZNF280BQ86YH2 543 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 C9orf106Q8NAJ2 232 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 XAGE5Q8WWM1 108 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 RPL36ALQ969Q0 106 aaKnown RBP4.49□□□□□ -1.69
VPS13A-213ENST00000539950 GPATCH3Q96I76 525 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 MRGPRX1Q96LB2 322 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 P2RX7Q99572 595 aaKnown RBP4.49□□□□□ -1.69
VPS13A-213ENST00000539950 BHMT2Q9H2M3 363 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 SLC12A5Q9H2X9 1139 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 SARS2Q9NP81 518 aaKnown RBP4.49□□□□□ -1.69
VPS13A-213ENST00000539950 AASDHPPTQ9NRN7 309 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 STAP2Q9UGK3 403 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 CPA4Q9UI42 421 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 ADAMTS5Q9UNA0 930 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 MED16Q9Y2X0 877 aa4.49□□□□□ -1.69
VPS13A-213ENST00000539950 ADAMTS3O15072 1205 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 CSF1RP07333 972 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 NPSP0C0P6 89 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 ADORA2AP29274 412 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 SLC11A2P49281 568 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 HOXA4Q00056 320 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-213ENST00000539950 PTPROQ16827 1216 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 ZIK1Q3SY52 487 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-213ENST00000539950 DEPDC1Q5TB30 811 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 SLC2A7Q6PXP3 512 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 Q6ZWC4 215 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 PNLDC1Q8NA58 520 aaKnown RBP4.48□□□□□ -1.69
VPS13A-213ENST00000539950 RP9Q8TA86 221 aaKnown RBP4.48□□□□□ -1.69
VPS13A-213ENST00000539950 MTFMTQ96DP5 389 aaKnown RBP4.48□□□□□ -1.69
VPS13A-213ENST00000539950 C1GALT1C1Q96EU7 318 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 ZNF48Q96MX3 618 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-213ENST00000539950 MOGAT1Q96PD6 335 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 CXorf36Q9H7Y0 433 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms