RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GAP43P17677 238 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 GARTP22102 1010 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 POLR2BP30876 1174 aaKnown RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 GJA4P35212 333 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 GALK1P51570 392 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 KCNA1Q09470 495 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 USP4Q13107 963 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 MTF1Q14872 753 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 SF3A2Q15428 464 aaKnown RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 ZNF77Q15935 545 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 CFAP221Q4G0U5 840 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 USP49Q70CQ1 688 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 SYT13Q7L8C5 426 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 DYMQ7RTS9 669 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 C12orf50Q8NA57 414 aaPredicted RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 CACTINQ8WUQ7 758 aaKnown RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 OSCP1Q8WVF1 389 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 DNAJC19Q96DA6 116 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 FUBP3Q96I24 572 aaKnown RBP eCLIP14.59□□□□□ -0.07
SS18-204ENST00000539244 EPSTI1Q96J88 318 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 ACCSQ96QU6 501 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 P2RY13Q9BPV8 354 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 ECT2Q9H8V3 914 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 MRPL44Q9H9J2 332 aaKnown RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 OLFML3Q9NRN5 406 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 EBF1Q9UH73 591 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 ITGA11Q9UKX5 1188 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 MAGED2Q9UNF1 606 aaPredicted RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 AGAP1Q9UPQ3 857 aa14.59□□□□□ -0.07
SS18-204ENST00000539244 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.59□□□□□ -0.07
SS18-204ENST00000539244 MYMKA6NI61 221 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 GABRDO14764 452 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 HUS1O60921 280 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 TCF3P15923 654 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 CYP2F1P24903 491 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 PMLP29590 882 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 TFAMQ00059 246 aaKnown RBP14.58□□□□□ -0.08
SS18-204ENST00000539244 MYL7Q01449 175 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 DDR2Q16832 855 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 ST3GAL2Q16842 350 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 PLK5Q496M5 336 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 SDHAF4Q5VUM1 108 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 CPA6Q8N4T0 437 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 TOP6BLQ8N6T0 577 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 STKLD1Q8NE28 680 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 ZSWIM2Q8NEG5 633 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 EZH1Q92800 747 aaPredicted RBP14.58□□□□□ -0.08
SS18-204ENST00000539244 FAM213AQ9BRX8 229 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 RXFP3Q9NSD7 469 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 CCDC39Q9UFE4 941 aa14.58□□□□□ -0.08
SS18-204ENST00000539244 HELZP42694 1942 aaKnown RBP14.57□□□□□ -0.08
SS18-204ENST00000539244 LAMA1P25391 3075 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 FRMD3A2A2Y4 597 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 USP17L7P0C7H9 530 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 MPLP40238 635 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 LHX1P48742 406 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 SHC2P98077 582 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 ALCAMQ13740 583 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 CCDC6Q16204 474 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 EML3Q32P44 896 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 STPG1Q5TH74 334 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 SCARA3Q6AZY7 606 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 FAM171BQ6P995 826 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 LIMS2Q7Z4I7 341 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 OSTM1Q86WC4 334 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 CD101Q93033 1021 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 ATP2A3Q93084 1043 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 SAAL1Q96ER3 474 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 SLC22A12Q96S37 553 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 DUSP15Q9H1R2 295 aaPredicted RBP14.57□□□□□ -0.08
SS18-204ENST00000539244 DUS2Q9NX74 493 aaKnown RBP14.57□□□□□ -0.08
SS18-204ENST00000539244 RBAKQ9NYW8 714 aaPredicted RBP14.57□□□□□ -0.08
SS18-204ENST00000539244 GCNT4Q9P109 453 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 SIX4Q9UIU6 781 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 FBXO2Q9UK22 296 aaPredicted RBP14.57□□□□□ -0.08
SS18-204ENST00000539244 GTF3C4Q9UKN8 822 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 PCDHB13Q9Y5F0 798 aa14.57□□□□□ -0.08
SS18-204ENST00000539244 SRPRBQ9Y5M8 271 aaKnown RBP14.57□□□□□ -0.08
SS18-204ENST00000539244 TRAV19A0A0A6YYK7 116 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 GCNT3O95395 438 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 ACAT1P24752 427 aaKnown RBP14.56□□□□□ -0.08
SS18-204ENST00000539244 PCSK1P29120 753 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 MAGEA11P43364 429 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 CASP5P51878 434 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 RBP5P82980 135 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 NAIF1Q69YI7 327 aaPredicted RBP14.56□□□□□ -0.08
SS18-204ENST00000539244 SV2BQ7L1I2 683 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 DPH6Q7L8W6 267 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 SPATA2LQ8IUW3 424 aaPredicted RBP14.56□□□□□ -0.08
SS18-204ENST00000539244 ADGRF2Q8IZF7 708 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 CSGALNACT2Q8N6G5 542 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 FSIP1Q8NA03 581 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 RPLP0P6Q8NHW5 317 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 ACDQ96AP0 544 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 CEP295NLQ96MC4 621 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 HHIPQ96QV1 700 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 LSM14BQ9BX40 385 aaKnown RBP14.56□□□□□ -0.08
SS18-204ENST00000539244 VPS45Q9NRW7 570 aa14.56□□□□□ -0.08
SS18-204ENST00000539244 POLR3BQ9NW08 1133 aaPredicted RBP14.56□□□□□ -0.08
SS18-204ENST00000539244 ANGPTL2Q9UKU9 493 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms