RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DSG1Q02413 1049 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 UPP1Q16831 310 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 FAM171A1Q5VUB5 890 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 SLFN12LQ6IEE8 588 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 SPATA31D4Q6ZUB0 917 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 DNAAF5Q86Y56 855 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 FBXL13Q8NEE6 735 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 SLC22A17Q8WUG5 538 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 OSBPL9Q96SU4 736 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 TLR10Q9BXR5 811 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 PARD6BQ9BYG5 372 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 ANKZF1Q9H8Y5 726 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLIP1-208ENST00000537004 AGO2Q9UKV8 859 aaKnown RBP12.72□□□□□ -0.37
CLIP1-208ENST00000537004 HYOU1Q9Y4L1 999 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 A0A0B4J269 797 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 H2AFZP0C0S5 128 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 BRCC3P46736 316 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 USP41Q3LFD5 358 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 H2AFVQ71UI9 128 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 SV2AQ7L0J3 742 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 PALB2Q86YC2 1186 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 PPM1KQ8N3J5 372 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 NOA1Q8NC60 698 aaKnown RBP12.72□□□□□ -0.37
CLIP1-208ENST00000537004 TAS1R2Q8TE23 839 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 CASP10Q92851 521 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 KAT5Q92993 513 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 MSTO1Q9BUK6 570 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 EMILIN2Q9BXX0 1053 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 CNTN3Q9P232 1028 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 TUBGCP4Q9UGJ1 667 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 INTUQ9ULD6 942 aa12.72□□□□□ -0.37
CLIP1-208ENST00000537004 SF3B1O75533 1304 aaKnown RBP eCLIP12.72□□□□□ -0.373e-6■■■■■ 137.9
CLIP1-208ENST00000537004 TDRD15B5MCY1 1934 aaKnown RBP12.72□□□□□ -0.37
CLIP1-208ENST00000537004 PDE2AO00408 941 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-208ENST00000537004 KCNE1P15382 129 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 TCP1P17987 556 aaKnown RBP12.71□□□□□ -0.37
CLIP1-208ENST00000537004 ACOT2P49753 483 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 GUCY2FP51841 1108 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 RARS2Q5T160 578 aaKnown RBP12.71□□□□□ -0.37
CLIP1-208ENST00000537004 TMC5Q6UXY8 1006 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 CREG2Q8IUH2 290 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 ADHFE1Q8IWW8 467 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 COG1Q8WTW3 980 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 SUSD6Q92537 303 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 RPGRIP1Q96KN7 1286 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 KREMEN1Q96MU8 473 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 ZNF446Q9NWS9 450 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 RAB20Q9NX57 234 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 FAM50BQ9Y247 325 aa12.71□□□□□ -0.37
CLIP1-208ENST00000537004 GRID2IPA4D2P6 1211 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 LACTBL1A8MY62 500 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 CLTAP09496 248 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 SRGAP2BP0DMP2 458 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 TNFAIP3P21580 790 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 MFAP3P55082 362 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 CLDN10P78369 228 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 PSMD6Q15008 389 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 CRELD2Q6UXH1 353 aaPredicted RBP12.71□□□□□ -0.38
CLIP1-208ENST00000537004 MSANTD4Q8NCY6 345 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 SLC20A1Q8WUM9 679 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 FAM212AQ96EL1 285 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 NT5C1BQ96P26 610 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 PSMB7Q99436 277 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 AGPAT1Q99943 283 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 EPHX3Q9H6B9 360 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 STK39Q9UEW8 545 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 CITO14578 2027 aa12.71□□□□□ -0.38
CLIP1-208ENST00000537004 TRIP11Q15643 1979 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 A0A0A6YYK5 440 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 PODXLO00592 558 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 OGTO15294 1046 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 ADAM12O43184 909 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 FTCDO95954 541 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 LDHAP00338 332 aaKnown RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 RHOXF2BP0C7M4 288 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 TKTP29401 623 aaKnown RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 CXCR5P32302 372 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 USP8P40818 1118 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 NOP2P46087 812 aaKnown RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 GALCP54803 685 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 CBX2Q14781 532 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 IFI16Q16666 785 aaKnown RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 DCLRE1AQ6PJP8 1040 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 TMCO3Q6UWJ1 677 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 C15orf39Q6ZRI6 1047 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 FAM71AQ8IYT1 594 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 SHC3Q92529 594 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 ZNF516Q92618 1163 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 KIF12Q96FN5 646 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 FAM84AQ96KN4 292 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 FNBP1Q96RU3 617 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 RHOXF2Q9BQY4 288 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 TTPALQ9BTX7 342 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 RXFP1Q9HBX9 757 aa12.7□□□□□ -0.38
CLIP1-208ENST00000537004 SEPT11Q9NVA2 429 aaKnown RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 RBAKQ9NYW8 714 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-208ENST00000537004 TMCO5BA8MYB1 307 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 RFPL2O75678 378 aa12.69□□□□□ -0.38
CLIP1-208ENST00000537004 ADH1AP07327 375 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms