RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NUDT5Q9UKK9 219 aa5.86□□□□□ -1.47
CD44-236ENST00000533222 AGO2Q9UKV8 859 aaKnown RBP5.86□□□□□ -1.47
CD44-236ENST00000533222 RPL26L1Q9UNX3 145 aaKnown RBP5.86□□□□□ -1.47
CD44-236ENST00000533222 RRP7AQ9Y3A4 280 aaKnown RBP5.86□□□□□ -1.47
CD44-236ENST00000533222 RNF114Q9Y508 228 aa5.86□□□□□ -1.47
CD44-236ENST00000533222 CFAP43Q8NDM7 1665 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ITSN2Q9NZM3 1697 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 NRXN1Q9ULB1 1477 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 MSH6P52701 1360 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CDHR2Q9BYE9 1310 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 LOC105371267A0A1B0GV96 52 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PVALEFA0A1B0GWK0 134 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 OR5K4A6NMS3 321 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 GOLGA8MH3BSY2 632 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 HRKO00198 91 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 TBX3O15119 743 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PLSCR1O15162 318 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 SLC22A1O15245 554 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 RNMTO43148 476 aaKnown RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 PDE8AO60658 829 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 LCA5LO95447 670 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PAHP00439 452 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 APOEP02649 317 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ASGR2P07307 311 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CLTAP09496 248 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 KRT13P13646 458 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ZKSCAN1P17029 563 aaPredicted RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 EIF2S2P20042 333 aaKnown RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 HMOX2P30519 316 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CETN2P41208 172 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 STAT5AP42229 794 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 KRT6CP48668 564 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 SSTP61278 116 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 MRPS15P82914 257 aaKnown RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 MXRA7P84157 204 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 APBA1Q02410 837 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PLOD1Q02809 727 aaPredicted RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 GRIN1Q05586 938 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 SPIRE1Q08AE8 756 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 RIPPLY1Q0D2K3 151 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 GALNT1Q10472 559 aaPredicted RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 STK4Q13043 487 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 TUSC3Q13454 348 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ITGA9Q13797 1035 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 SQLEQ14534 574 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 EPHA7Q15375 998 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CNGA2Q16280 664 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 FAM47CQ5HY64 1035 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CEP78Q5JTW2 689 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ZNF648Q5T619 568 aaPredicted RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 GKAP1Q5VSY0 366 aaPredicted RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 OTUD7BQ6GQQ9 843 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PKN3Q6P5Z2 889 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 DRICH1Q6PGQ1 229 aaPredicted RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 DDX42Q86XP3 938 aaKnown RBP eCLIP5.85□□□□□ -1.47
CD44-236ENST00000533222 FAM26EQ8N5C1 309 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 TMEM57Q8N5G2 664 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 UBR7Q8N806 425 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CCDC148Q8NFR7 591 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CLEC4DQ8WXI8 215 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 FAM149B1Q96BN6 582 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 SLC39A13Q96H72 371 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CEP295NLQ96MC4 621 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 TUBA1CQ9BQE3 449 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 TTPALQ9BTX7 342 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 APOL5Q9BWW9 433 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 FAM126AQ9BYI3 521 aaPredicted RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 MTFR1LQ9H019 292 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ZNF700Q9H0M5 742 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 TPK1Q9H3S4 243 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 FAM204AQ9H8W3 233 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PSTPIP2Q9H939 334 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 SLC38A10Q9HBR0 1119 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 XAB2Q9HCS7 855 aaKnown RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 RIC8AQ9NPQ8 531 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ATP8A2Q9NTI2 1148 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 INTS7Q9NVH2 962 aaKnown RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 FAIMQ9NVQ4 179 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PIH1D1Q9NWS0 290 aaKnown RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 SIRT5Q9NXA8 310 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CTTNBP2NLQ9P2B4 639 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 ASH2LQ9UBL3 628 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 PA2G4Q9UQ80 394 aaKnown RBP5.85□□□□□ -1.47
CD44-236ENST00000533222 SNX8Q9Y5X2 465 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 CLTCL1P53675 1640 aa5.85□□□□□ -1.47
CD44-236ENST00000533222 SETD1BQ9UPS6 1966 aaKnown RBP5.84□□□□□ -1.47
CD44-236ENST00000533222 DYTNA2CJ06 578 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 TRIM64A6NGJ6 449 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 TRIM64BA6NI03 449 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 OR6C65A6NJZ3 312 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 ZNF891A8MT65 544 aaPredicted RBP5.84□□□□□ -1.47
CD44-236ENST00000533222 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.84□□□□□ -1.47
CD44-236ENST00000533222 MYO1FO00160 1098 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 KRIT1O00522 736 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 CETN3O15182 167 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 PEX10O60683 326 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 ATP6V1G2O95670 118 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 KRT1P04264 644 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 GZMAP12544 262 aa5.84□□□□□ -1.47
CD44-236ENST00000533222 ATF2P15336 505 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms