RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 LMNB2Q03252 620 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 RUNX3Q13761 415 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 SIM2Q14190 667 aaPredicted RBP15.79■□□□□ 0.12
VPS28-215ENST00000531924 MAPRE1Q15691 268 aaKnown RBP15.79■□□□□ 0.12
VPS28-215ENST00000531924 RSPO4Q2I0M5 234 aaPredicted RBP15.79■□□□□ 0.12
VPS28-215ENST00000531924 FAM26FQ5R3K3 315 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 LAIR1Q6GTX8 287 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 Q6ZS52 159 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 DPH6Q7L8W6 267 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 HS2ST1Q7LGA3 356 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 HSCBQ8IWL3 235 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 RDH13Q8NBN7 331 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 STKLD1Q8NE28 680 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 USP13Q92995 863 aaPredicted RBP15.79■□□□□ 0.12
VPS28-215ENST00000531924 FUBP3Q96I24 572 aaKnown RBP eCLIP15.79■□□□□ 0.12
VPS28-215ENST00000531924 EBF3Q9H4W6 596 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 MAGEC2Q9UBF1 373 aaPredicted RBP15.79■□□□□ 0.12
VPS28-215ENST00000531924 SIX4Q9UIU6 781 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 PATJQ8NI35 1801 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 SCN1AP35498 2009 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 PRR5-ARHGAP8B1AHC4 643 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CHURC1-FNTBB4DL54 471 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 NOL4O94818 638 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 USP17L7P0C7H9 530 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 TDGF1P13385 188 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 ANXA13P27216 316 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CNR2P34972 360 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 ME1P48163 572 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 FNTBP49356 437 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CYP2J2P51589 502 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 ARHGAP8P85298 464 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CYP27A1Q02318 531 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 GAS6Q14393 721 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 PDGFRLQ15198 375 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 E2F4Q16254 413 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 SNRNP35Q16560 246 aaKnown RBP15.78■□□□□ 0.12
VPS28-215ENST00000531924 SOWAHAQ2M3V2 549 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CFAP221Q4G0U5 840 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CEP68Q76N32 757 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.78■□□□□ 0.12
VPS28-215ENST00000531924 TMEM150AQ86TG1 271 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 LONP2Q86WA8 852 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 OSTM1Q86WC4 334 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 WDR49Q8IV35 697 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 GLIS3Q8NEA6 775 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 OR5B17Q8NGF7 314 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CCDC127Q96BQ5 260 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 TRMT2BQ96GJ1 504 aaKnown RBP15.78■□□□□ 0.12
VPS28-215ENST00000531924 SYT15Q9BQS2 421 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 SNX25Q9H3E2 840 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 MAGEF1Q9HAY2 307 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CDV3Q9UKY7 258 aaKnown RBP15.78■□□□□ 0.12
VPS28-215ENST00000531924 CDH9Q9ULB4 789 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 CCL26Q9Y258 94 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 TSC2P49815 1807 aa15.78■□□□□ 0.12
VPS28-215ENST00000531924 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.77■□□□□ 0.12
VPS28-215ENST00000531924 GABRDO14764 452 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 POLR2DO15514 142 aaKnown RBP15.77■□□□□ 0.12
VPS28-215ENST00000531924 ATG13O75143 517 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 PDGFRBP09619 1106 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 GRIK1P39086 918 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 PDE6CP51160 858 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 PSMC1P62191 440 aaKnown RBP15.77■□□□□ 0.12
VPS28-215ENST00000531924 SNRPFP62306 86 aaKnown RBP15.77■□□□□ 0.12
VPS28-215ENST00000531924 TRPC3Q13507 836 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 ZNF268Q14587 947 aaPredicted RBP15.77■□□□□ 0.12
VPS28-215ENST00000531924 KCNB1Q14721 858 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 TRIM68Q6AZZ1 485 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 NELFCDQ8IXH7 590 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 CPA6Q8N4T0 437 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 CXorf38Q8TB03 319 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 ZNF507Q8TCN5 953 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 C7orf25Q9BPX7 421 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 FAM83CQ9BQN1 747 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 AGPAT3Q9NRZ7 376 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 EHD2Q9NZN4 543 aa15.77■□□□□ 0.12
VPS28-215ENST00000531924 OTOGLQ3ZCN5 2332 aa15.77■□□□□ 0.11
VPS28-215ENST00000531924 ANK1P16157 1881 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 UBE4BO95155 1302 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 PTPRJQ12913 1337 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 CLIC2O15247 247 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 HCRTO43612 131 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 PHACTR2O75167 634 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 ATP2C2O75185 946 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 PAPSS2O95340 614 aaPredicted RBP15.76■□□□□ 0.11
VPS28-215ENST00000531924 MAGEA11P43364 429 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 IFNAR2P48551 515 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 TNNC1P63316 161 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 FAM160A1Q05DH4 1040 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 CCINQ13939 588 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 SCARA3Q6AZY7 606 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 SHC4Q6S5L8 630 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 VSTM1Q6UX27 236 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 UNC13DQ70J99 1090 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 TRAPPC11Q7Z392 1133 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 CEP57L1Q8IYX8 460 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 XXYLT1Q8NBI6 393 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 MYLPFQ96A32 169 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 MYRFLQ96LU7 910 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 PKMYT1Q99640 499 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms