RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RTKNQ9BST9 563 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 EBF3Q9H4W6 596 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 PCIF1Q9H4Z3 704 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 PDE11AQ9HCR9 933 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 UXTQ9UBK9 157 aaPredicted RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 GTF3C4Q9UKN8 822 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 MAGED2Q9UNF1 606 aaPredicted RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 MTMR6Q9Y217 621 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 SNX9Q9Y5X1 595 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 PRPF6O94906 941 aaKnown RBP12.18□□□□□ -0.46
VPS28-214ENST00000531032 KRT19P08727 400 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 TMEM191BP0C7N4 346 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 PCSK1P29120 753 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 HOXC13P31276 330 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 GRSF1Q12849 480 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS28-214ENST00000531032 PDGFRLQ15198 375 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 CSRP2Q16527 193 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 CCDC142Q17RM4 750 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 SOWAHAQ2M3V2 549 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 TRIM68Q6AZZ1 485 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 FSTL4Q6MZW2 842 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 PKN3Q6P5Z2 889 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 DPH6Q7L8W6 267 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 LIMS2Q7Z4I7 341 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.18□□□□□ -0.46
VPS28-214ENST00000531032 CCDC65Q8IXS2 484 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 PANK2Q9BZ23 570 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 TNMDQ9H2S6 317 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 ZSCAN16Q9H4T2 348 aaPredicted RBP12.18□□□□□ -0.46
VPS28-214ENST00000531032 SEMA4GQ9NTN9 838 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 INTS13Q9NVM9 706 aa12.18□□□□□ -0.46
VPS28-214ENST00000531032 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.18□□□□□ -0.46
VPS28-214ENST00000531032 GREB1Q4ZG55 1949 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 ANAPC1Q9H1A4 1944 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 PTPRJQ12913 1337 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 CCDC163A0A0D9SF12 145 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 TULP1O00294 542 aaPredicted RBP12.17□□□□□ -0.46
VPS28-214ENST00000531032 HCRTO43612 131 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 ARSAP15289 507 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 MAGEA11P43364 429 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 AMPD2Q01433 879 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 FAM160A1Q05DH4 1040 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 MYO1EQ12965 1108 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 USP4Q13107 963 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 MTF1Q14872 753 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 ZNF77Q15935 545 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 E2F4Q16254 413 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 CC2D1AQ6P1N0 951 aaPredicted RBP12.17□□□□□ -0.46
VPS28-214ENST00000531032 FAM171BQ6P995 826 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 STXBP4Q6ZWJ1 553 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 SPATA2LQ8IUW3 424 aaPredicted RBP12.17□□□□□ -0.46
VPS28-214ENST00000531032 FAM160A2Q8N612 972 aaPredicted RBP12.17□□□□□ -0.46
VPS28-214ENST00000531032 PDILTQ8N807 584 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 LINC00301Q8NCQ3 95 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 GLIS3Q8NEA6 775 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 OR5B17Q8NGF7 314 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 NETO1Q8TDF5 533 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 NOC3LQ8WTT2 800 aaKnown RBP12.17□□□□□ -0.46
VPS28-214ENST00000531032 KBTBD7Q8WVZ9 684 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 ANKRD36BP1Q96IX9 119 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 KBTBD4Q9NVX7 518 aa12.17□□□□□ -0.46
VPS28-214ENST00000531032 SPTBN2O15020 2390 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 PTPRDP23468 1912 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 HELZP42694 1942 aaKnown RBP12.16□□□□□ -0.46
VPS28-214ENST00000531032 ZNF233A6NK53 670 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 SLC30A4O14863 429 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 EIF3DO15371 548 aaKnown RBP eCLIP12.16□□□□□ -0.46
VPS28-214ENST00000531032 STX6O43752 255 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 ATG13O75143 517 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 USP17L7P0C7H9 530 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 HOXD13P35453 343 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 SURF1Q15526 300 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 DUOXA2Q1HG44 320 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 LMBRD2Q68DH5 695 aaPredicted RBP12.16□□□□□ -0.46
VPS28-214ENST00000531032 CNNM4Q6P4Q7 775 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 C4orf50Q6ZRC1 276 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 PRR23CQ6ZRP0 262 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 CEP68Q76N32 757 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 CBWD2Q8IUF1 395 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 OSCP1Q8WVF1 389 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 GAB3Q8WWW8 586 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 HPDLQ96IR7 371 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 CEP295NLQ96MC4 621 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 SLC22A12Q96S37 553 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 SYT15Q9BQS2 421 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 BACH2Q9BYV9 841 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 TRIM9Q9C026 710 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 LRRC27Q9C0I9 530 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 CUEDC2Q9H467 287 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 ECT2Q9H8V3 914 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 HSPBP1Q9NZL4 362 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 GCNT4Q9P109 453 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 CDH9Q9ULB4 789 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 RALGAPA1Q6GYQ0 2036 aa12.16□□□□□ -0.46
VPS28-214ENST00000531032 SPAG17Q6Q759 2223 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 TRAV19A0A0A6YYK7 116 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 DCDC2BA2VCK2 349 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 FOXD2O60548 495 aaPredicted RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 RNF40O75150 1001 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms