RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SSTR1P30872 391 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 TFDP1Q14186 410 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 FNBP1LQ5T0N5 605 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 SCARA5Q6ZMJ2 495 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 CATSPERGQ6ZRH7 1159 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 VSIG1Q86XK7 387 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 C10orf82Q8WW14 230 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 JDP2Q8WYK2 163 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 PICK1Q9NRD5 415 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 SNCAIPQ9Y6H5 919 aa20.24■□□□□ 0.83
VPS28-213ENST00000530983 MGAMO43451 1857 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 LRCH4O75427 683 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 TOM1L1O75674 476 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 TARSP26639 723 aaKnown RBP20.23■□□□□ 0.83
VPS28-213ENST00000530983 CNTN2Q02246 1040 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 SGSM1Q2NKQ1 1148 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 KCNT1Q5JUK3 1230 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 LVRNQ6Q4G3 990 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 PCGF5Q86SE9 256 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 PPIL6Q8IXY8 311 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 TMEM237Q96Q45 408 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 TCHPQ9BT92 498 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 ZWILCHQ9H900 591 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 TJP2Q9UDY2 1190 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 AGTPBP1Q9UPW5 1226 aa20.23■□□□□ 0.83
VPS28-213ENST00000530983 PIAS1O75925 651 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 PSMA2P25787 234 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 ASPAP45381 313 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 PTPN20Q4JDL3 420 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 HHATQ5VTY9 493 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 DENND1BQ6P3S1 775 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 KIAA0319LQ8IZA0 1049 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 NAT8LQ8N9F0 302 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 JOSD2Q8TAC2 188 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 PRPF31Q8WWY3 499 aaKnown RBP20.22■□□□□ 0.83
VPS28-213ENST00000530983 RAB3IPQ96QF0 476 aaPredicted RBP20.22■□□□□ 0.83
VPS28-213ENST00000530983 SSU72Q9NP77 194 aaKnown RBP20.22■□□□□ 0.83
VPS28-213ENST00000530983 CYLDQ9NQC7 956 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 FETUBQ9UGM5 382 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 EFR3BQ9Y2G0 817 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 CST8O60676 142 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 DCTN3O75935 186 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 ATP5HO75947 161 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 UBA1P22314 1058 aaKnown RBP20.22■□□□□ 0.83
VPS28-213ENST00000530983 ATP11AP98196 1134 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 DUOXA2Q1HG44 320 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 PARP6Q2NL67 630 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 DCAF15Q66K64 600 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 NAIF1Q69YI7 327 aaPredicted RBP20.22■□□□□ 0.83
VPS28-213ENST00000530983 OTOAQ7RTW8 1153 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 DHX37Q8IY37 1157 aaKnown RBP20.22■□□□□ 0.83
VPS28-213ENST00000530983 PYROXD1Q8WU10 500 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 PHACTR1Q9C0D0 580 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 CYTH4Q9UIA0 394 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 HAO1Q9UJM8 370 aa20.22■□□□□ 0.83
VPS28-213ENST00000530983 ZMYND8Q9ULU4 1186 aaPredicted RBP20.22■□□□□ 0.83
VPS28-213ENST00000530983 SPDYE16A6NNV3 312 aaPredicted RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 T-ENOLP0DO92 83 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 BBS12Q6ZW61 710 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 BZW1Q7L1Q6 419 aaKnown RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 MICALL2Q8IY33 904 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 ATP11CQ8NB49 1132 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 MZB1Q8WU39 189 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 ZNF75CPQ92670 426 aaPredicted RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 DHRS4Q9BTZ2 278 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 MRPL4Q9BYD3 311 aaKnown RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 XYLT2Q9H1B5 865 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 BATF3Q9NR55 127 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 STRIP2Q9ULQ0 834 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 ANK1P16157 1881 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 ABLIM1O14639 778 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 DIAPH2O60879 1101 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 MAFO75444 373 aaPredicted RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 FARP2O94887 1054 aaPredicted RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 KRT3P12035 628 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 RPL22P35268 128 aaKnown RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 ARL4CP56559 192 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 PRAMEF18Q5VWM3 479 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 ADGRD1Q6QNK2 874 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 RHPN2Q8IUC4 686 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 DNERQ8NFT8 737 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 ZNF570Q96NI8 536 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 PAFAH2Q99487 392 aa20.21■□□□□ 0.83
VPS28-213ENST00000530983 ACO2Q99798 780 aaKnown RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 CPSF3Q9UKF6 684 aaKnown RBP20.21■□□□□ 0.83
VPS28-213ENST00000530983 TCRBV7S3A2A0A539 114 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 SIGLEC16A6NMB1 481 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 C19orf81C9J6K1 198 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 E7ESA3 106 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 OGTO15294 1046 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 WFS1O76024 890 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 ZWINTO95229 277 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 CD48P09326 243 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 HOXC6P09630 235 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 ADRA1DP25100 572 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 RPS12P25398 132 aaKnown RBP20.2■□□□□ 0.82
VPS28-213ENST00000530983 CCNHP51946 323 aaPredicted RBP20.2■□□□□ 0.82
VPS28-213ENST00000530983 TRPC3Q13507 836 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 TAZQ16635 292 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 ZNF699Q32M78 642 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms