RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 TNFRSF1AP19438 455 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 ACO1P21399 889 aaKnown RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 CARSP49589 748 aaKnown RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 MMP14P50281 582 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 TOB1P50616 345 aaPredicted RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 RNASE9P60153 205 aaKnown RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 MXRA7P84157 204 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 MC2RQ01718 297 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 SP140Q13342 867 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 CTBP1Q13363 440 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 PTK2BQ14289 1009 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 UBXN2BQ14CS0 331 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 BMT2Q1RMZ1 405 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 PABPC1LQ4VXU2 614 aaKnown RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 CCDC93Q567U6 631 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 METTL24Q5JXM2 366 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 RRAGBQ5VZM2 374 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 LMBRD2Q68DH5 695 aaPredicted RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 SLC30A10Q6XR72 485 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 RINLQ6ZS11 566 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 MICU3Q86XE3 530 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 ZFPM1Q8IX07 1006 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 ANKRD35Q8N283 1001 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 MPP5Q8N3R9 675 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 SLC17A8Q8NDX2 589 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 OR52N2Q8NGI0 321 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 CYP2W1Q8TAV3 490 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 TBC1D15Q8TC07 691 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 TFAP2CQ92754 450 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 ZNF622Q969S3 477 aaKnown RBP eCLIP3.82□□□□□ -1.8
CD44-229ENST00000528672 LRRC46Q96FV0 321 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 MAGEB5Q9BZ81 275 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 BRD9Q9H8M2 597 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 A1CFQ9NQ94 594 aaKnown RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 TBC1D23Q9NUY8 699 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 CFAP97Q9P2B7 532 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 ZNF212Q9UDV6 495 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 FBXO2Q9UK22 296 aaPredicted RBP3.82□□□□□ -1.8
CD44-229ENST00000528672 GJD2Q9UKL4 321 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 CRYL1Q9Y2S2 319 aa3.82□□□□□ -1.8
CD44-229ENST00000528672 FAM234BA2RU67 622 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 CLCA1A8K7I4 914 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 ZNF785A8K8V0 405 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 CAPN14A8MX76 684 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 MYO1CO00159 1063 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 TRIM38O00635 465 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 NDST3O95803 873 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 GJB1P08034 283 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 NR4A1P22736 598 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 ACRV1P26436 265 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 SP2Q02086 613 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 NHLH2Q02577 135 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 PTH1RQ03431 593 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 KIF22Q14807 665 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 RAB30Q15771 203 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 TIGD6Q17RP2 521 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 PDCD4Q53EL6 469 aaKnown RBP3.81□□□□□ -1.8
CD44-229ENST00000528672 ATXN7L2Q5T6C5 722 aaPredicted RBP3.81□□□□□ -1.8
CD44-229ENST00000528672 OTUD7BQ6GQQ9 843 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 JMJD6Q6NYC1 403 aaPredicted RBP3.81□□□□□ -1.8
CD44-229ENST00000528672 SEM1Q6ZVN7 128 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 HTR3DQ70Z44 454 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 SGMS1Q86VZ5 419 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 SUGP1Q8IWZ8 645 aaKnown RBP3.81□□□□□ -1.8
CD44-229ENST00000528672 COLGALT2Q8IYK4 626 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 PDPRQ8NCN5 879 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 IL17RDQ8NFM7 739 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 FAM71BQ8TC56 605 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 ZNF483Q8TF39 744 aaPredicted RBP3.81□□□□□ -1.8
CD44-229ENST00000528672 RUBCNQ92622 972 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 EXTL1Q92935 676 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 SEC62Q99442 399 aaKnown RBP3.81□□□□□ -1.8
CD44-229ENST00000528672 STK31Q9BXU1 1019 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 PACSIN1Q9BY11 444 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 CHST8Q9H2A9 424 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 ZNF703Q9H7S9 590 aaPredicted RBP3.81□□□□□ -1.8
CD44-229ENST00000528672 POGKQ9P215 609 aa3.81□□□□□ -1.8
CD44-229ENST00000528672 KRTAP23-1A1A580 65 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 MBD3L4A6NDZ8 208 aaPredicted RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 MBD3L3A6NE82 208 aaPredicted RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 AQP12BA6NM10 295 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 GRXCR1A8MXD5 290 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 AHRRA9YTQ3 701 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 M0QYG6 137 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 EYA2O00167 538 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 IPO5O00410 1097 aaKnown RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 MATN3O15232 486 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 LPXNO60711 386 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 SNX2O60749 519 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 RASSF9O75901 435 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 UNC5CO95185 931 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 MBD4O95243 580 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 PEX11BO96011 259 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 TXNP10599 105 aaKnown RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 IDEP14735 1019 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 IL1R1P14778 569 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 KLRC1P26715 233 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 ZNF135P52742 658 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms