RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 USP25Q9UHP3 1055 aa11.18□□□□□ -0.62
PRPF40B-204ENST00000527253 CDH9Q9ULB4 789 aa11.18□□□□□ -0.62
PRPF40B-204ENST00000527253 CCL26Q9Y258 94 aa11.18□□□□□ -0.62
PRPF40B-204ENST00000527253 PIAS3Q9Y6X2 628 aa11.18□□□□□ -0.62
PRPF40B-204ENST00000527253 DENND4CQ5VZ89 1909 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 OTOGLQ3ZCN5 2332 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 A0A1W2PQ27 194 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 A0A1W2PQ64 194 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 A0A1W2PQD8 194 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 MAN2B1O00754 1011 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 VNN1O95497 513 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 C4BPAP04003 597 aaKnown RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 CSH1P0DML2 217 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 CSH2P0DML3 217 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 CCNE1P24864 410 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 PCSK1P29120 753 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 CLDN10P78369 228 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 DPYDQ12882 1025 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 TAF12Q16514 161 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 CFAP221Q4G0U5 840 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 C1orf220Q5T0J3 134 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 TDRD10Q5VZ19 366 aaKnown RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 TXNDC11Q6PKC3 985 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 KRBA2Q6ZNG9 492 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 SPATA2LQ8IUW3 424 aaPredicted RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 SLC9A9Q8IVB4 645 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 CMTM8Q8IZV2 173 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 MAB21L3Q8N8X9 362 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 PARD3BQ8TEW8 1205 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 TMEM174Q8WUU8 243 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 FAM3CQ92520 227 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 USP13Q92995 863 aaPredicted RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 MYLPFQ96A32 169 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 MYRFLQ96LU7 910 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 FNBP1Q96RU3 617 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 MMS19Q96T76 1030 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 DPEP3Q9H4B8 488 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 SPATA6Q9NWH7 488 aaPredicted RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 OBP2AQ9NY56 170 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 GTSE1Q9NYZ3 720 aa11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 NDRG2Q9UN36 371 aaKnown RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 MAGED2Q9UNF1 606 aaPredicted RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 NUP210Q8TEM1 1887 aaPredicted RBP11.17□□□□□ -0.62
PRPF40B-204ENST00000527253 USP34Q70CQ2 3546 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 PDXKO00764 312 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 DPYSL4O14531 572 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 TACC1O75410 805 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 RHOBTB3O94955 611 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 STAU1O95793 577 aaKnown RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 NR3C1P04150 777 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 FAM163BP0C2L3 166 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 CHRNB1P11230 501 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 BDNFP23560 247 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 GNL1P36915 607 aaPredicted RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 MAGEA11P43364 429 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 RPS9P46781 194 aaKnown RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 CACNA2D1P54289 1103 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 USP46P62068 366 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 RPL10AP62906 217 aaKnown RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 TNK2Q07912 1038 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 MTAPQ13126 283 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 WDR72Q3MJ13 1102 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 TSSK4Q6SA08 328 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 MON1AQ86VX9 555 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 SCN4BQ8IWT1 228 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 YAF2Q8IY57 180 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 GOLGA5Q8TBA6 731 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 BPIFB1Q8TDL5 484 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 NKD2Q969F2 451 aaPredicted RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 TRMT2BQ96GJ1 504 aaKnown RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 PCED1BQ96HM7 432 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 FUBP3Q96I24 572 aaKnown RBP eCLIP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 SLC22A12Q96S37 553 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 CYP2S1Q96SQ9 504 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 SCAND2PQ9GZW5 306 aaPredicted RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 SDCBP2Q9H190 292 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 SMYD3Q9H7B4 428 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 LMAN1LQ9HAT1 526 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 TMEM30AQ9NV96 361 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 MAGEC2Q9UBF1 373 aaPredicted RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 MRPS17Q9Y2R5 130 aaKnown RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 R3HCC1Q9Y3T6 440 aaKnown RBP11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 OBSL1O75147 1896 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 MYO15AQ9UKN7 3530 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 PATJQ8NI35 1801 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 FANCMQ8IYD8 2048 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 SPTBN4Q9H254 2564 aa11.16□□□□□ -0.62
PRPF40B-204ENST00000527253 OTOL1A6NHN0 477 aaPredicted RBP11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 ZNF202O95125 648 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 MYL1P05976 194 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 TDGF1P13385 188 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 PTPN1P18031 435 aaKnown RBP11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 RAP1GAPP47736 663 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 MLLT6P55198 1093 aaPredicted RBP11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 CDH8P55286 799 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 CSTF1Q05048 431 aaKnown RBP11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 TRPC3Q13507 836 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 GAS6Q14393 721 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 ARHGAP29Q52LW3 1261 aa11.15□□□□□ -0.62
PRPF40B-204ENST00000527253 MDH1BQ5I0G3 518 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms