RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PLA2G2FQ9BZM2 168 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 EHD2Q9NZN4 543 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 MAPK8IP1Q9UQF2 711 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 DPYSL4O14531 572 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 KINO60870 393 aaKnown RBP22.02■■□□□ 1.12
VPS28-206ENST00000526734 AKAP3O75969 853 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 NOL4O94818 638 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 HMGA1P17096 107 aaKnown RBP22.02■■□□□ 1.12
VPS28-206ENST00000526734 LMO2P25791 158 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 PPP1R2P41236 205 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 TCF15Q12870 199 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 ADAM9Q13443 819 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 VITQ6UXI7 678 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 SV2AQ7L0J3 742 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 MYLPFQ96A32 169 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 MYRFLQ96LU7 910 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 NELL2Q99435 816 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 MRPL45Q9BRJ2 306 aaKnown RBP22.02■■□□□ 1.12
VPS28-206ENST00000526734 CRTAC1Q9NQ79 661 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 NXF1Q9UBU9 619 aaKnown RBP22.02■■□□□ 1.12
VPS28-206ENST00000526734 MRPS17Q9Y2R5 130 aaKnown RBP22.02■■□□□ 1.12
VPS28-206ENST00000526734 SIT1Q9Y3P8 196 aa22.02■■□□□ 1.12
VPS28-206ENST00000526734 KANSL1LA0AUZ9 987 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 HEPACAM2A8MVW5 462 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 ZNF263O14978 683 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 CLSTN1O94985 981 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 PDGFRBP09619 1106 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 MAGEA9P43362 315 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 NLRP12P59046 1061 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 PSMC1P62191 440 aaKnown RBP22.01■■□□□ 1.11
VPS28-206ENST00000526734 DLG4P78352 724 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 DDR2Q16832 855 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 ARID3BQ8IVW6 561 aaPredicted RBP22.01■■□□□ 1.11
VPS28-206ENST00000526734 YAF2Q8IY57 180 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 PJA1Q8NG27 643 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 MRPS31Q92665 395 aaKnown RBP22.01■■□□□ 1.11
VPS28-206ENST00000526734 MSANTD3Q96H12 275 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 SPATA17Q96L03 361 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 TSG101Q99816 390 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 IMPG2Q9BZV3 1241 aa22.01■■□□□ 1.11
VPS28-206ENST00000526734 SLC38A8A6NNN8 435 aa22■■□□□ 1.11
VPS28-206ENST00000526734 A8MXQ7 604 aa22■■□□□ 1.11
VPS28-206ENST00000526734 TRIM66O15016 1216 aa22■■□□□ 1.11
VPS28-206ENST00000526734 CETN3O15182 167 aa22■■□□□ 1.11
VPS28-206ENST00000526734 HCRTO43612 131 aa22■■□□□ 1.11
VPS28-206ENST00000526734 STX10O60499 249 aa22■■□□□ 1.11
VPS28-206ENST00000526734 ATP2C2O75185 946 aa22■■□□□ 1.11
VPS28-206ENST00000526734 VNN1O95497 513 aa22■■□□□ 1.11
VPS28-206ENST00000526734 F11P03951 625 aa22■■□□□ 1.11
VPS28-206ENST00000526734 GLULP15104 373 aa22■■□□□ 1.11
VPS28-206ENST00000526734 ANXA13P27216 316 aa22■■□□□ 1.11
VPS28-206ENST00000526734 GDI1P31150 447 aa22■■□□□ 1.11
VPS28-206ENST00000526734 GTF2H1P32780 548 aa22■■□□□ 1.11
VPS28-206ENST00000526734 VIPR2P41587 438 aa22■■□□□ 1.11
VPS28-206ENST00000526734 MLLT6P55198 1093 aaPredicted RBP22■■□□□ 1.11
VPS28-206ENST00000526734 MCCD1P59942 119 aaPredicted RBP22■■□□□ 1.11
VPS28-206ENST00000526734 FCHO2Q0JRZ9 810 aa22■■□□□ 1.11
VPS28-206ENST00000526734 GRM2Q14416 872 aa22■■□□□ 1.11
VPS28-206ENST00000526734 C1orf228Q6PIY5 440 aa22■■□□□ 1.11
VPS28-206ENST00000526734 SCN4BQ8IWT1 228 aa22■■□□□ 1.11
VPS28-206ENST00000526734 DTWD2Q8NBA8 298 aa22■■□□□ 1.11
VPS28-206ENST00000526734 PCED1BQ96HM7 432 aa22■■□□□ 1.11
VPS28-206ENST00000526734 TNIP3Q96KP6 325 aa22■■□□□ 1.11
VPS28-206ENST00000526734 ELOVL4Q9GZR5 314 aa22■■□□□ 1.11
VPS28-206ENST00000526734 KIF9Q9HAQ2 790 aa22■■□□□ 1.11
VPS28-206ENST00000526734 PCDHA5Q9Y5H7 936 aa22■■□□□ 1.11
VPS28-206ENST00000526734 ATP8B3O60423 1300 aa22■■□□□ 1.11
VPS28-206ENST00000526734 MAN2B1O00754 1011 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 CHADO15335 359 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 PI15O43692 258 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 ASS1P00966 412 aaKnown RBP21.99■■□□□ 1.11
VPS28-206ENST00000526734 PTPN1P18031 435 aaKnown RBP21.99■■□□□ 1.11
VPS28-206ENST00000526734 TRIM21P19474 475 aaKnown RBP21.99■■□□□ 1.11
VPS28-206ENST00000526734 PIK3CAP42336 1068 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 GPR15P49685 360 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 CDR1P51861 262 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 CYP4F8P98187 520 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 CYP27A1Q02318 531 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 STIM1Q13586 685 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 ARHGAP29Q52LW3 1261 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 MDH1BQ5I0G3 518 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 STXBP5Q5T5C0 1151 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 ZNF852Q6ZMS4 543 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 B3GALNT2Q8NCR0 500 aa21.99■■□□□ 1.11
VPS28-206ENST00000526734 MAGED2Q9UNF1 606 aaPredicted RBP21.99■■□□□ 1.11
VPS28-206ENST00000526734 NCAM2O15394 837 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 EPB41P11171 864 aaKnown RBP21.98■■□□□ 1.11
VPS28-206ENST00000526734 AVPR1AP37288 418 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 PRCPP42785 496 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 PLCB2Q00722 1185 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 LRRC63Q05C16 580 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 CCDC142Q17RM4 750 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 C1orf220Q5T0J3 134 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 TPRG1Q6ZUI0 275 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 TMEM150AQ86TG1 271 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 MON1AQ86VX9 555 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 SMYD4Q8IYR2 804 aaPredicted RBP21.98■■□□□ 1.11
VPS28-206ENST00000526734 CMTM8Q8IZV2 173 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 CELF5Q8N6W0 485 aaKnown RBP21.98■■□□□ 1.11
VPS28-206ENST00000526734 CCDC150Q8NCX0 1101 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms