RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	FRMPD2	Q68DX3	1309 aa	Predicted RBP	5.82	□□□□□ -1.48
CD44-223	ENST00000526553	VWC2L	B2RUY7	222 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	TBC1D4	O60343	1298 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	URI1	O94763	535 aa	Predicted RBP	5.82	□□□□□ -1.48
CD44-223	ENST00000526553	NANOS3	P60323	173 aa	Known RBP	5.82	□□□□□ -1.48
CD44-223	ENST00000526553	FAM193A	P78312	1265 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	CTBP1	Q13363	440 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	POLD3	Q15054	466 aa	Predicted RBP	5.82	□□□□□ -1.48
CD44-223	ENST00000526553	SLC44A4	Q53GD3	710 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	RNF220	Q5VTB9	566 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	DARS2	Q6PI48	645 aa	Known RBP	5.82	□□□□□ -1.48
CD44-223	ENST00000526553	CCDC149	Q6ZUS6	474 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	DTX2	Q86UW9	622 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	DNAJC10	Q8IXB1	793 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	SLC15A4	Q8N697	577 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	FAM156A	Q8NDB6	213 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	ATRIP	Q8WXE1	791 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	MAML1	Q92585	1016 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	RFK	Q969G6	155 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	ZNF518B	Q9C0D4	1074 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	TPCN1	Q9ULQ1	816 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	ENTPD2	Q9Y5L3	495 aa		5.82	□□□□□ -1.48
CD44-223	ENST00000526553	USP19	O94966	1318 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	GOLIM4	O00461	696 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	NXPH3	O95157	252 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	PARN	O95453	639 aa	Known RBP	5.81	□□□□□ -1.48
CD44-223	ENST00000526553	GALE	Q14376	348 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	ZNF362	Q5T0B9	420 aa	Predicted RBP	5.81	□□□□□ -1.48
CD44-223	ENST00000526553	ZNF618	Q5T7W0	954 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	ARHGAP40	Q5TG30	622 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	CYB5RL	Q6IPT4	315 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	5.81	□□□□□ -1.48
CD44-223	ENST00000526553	FAM98A	Q8NCA5	519 aa	Known RBP	5.81	□□□□□ -1.48
CD44-223	ENST00000526553	UROC1	Q96N76	676 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	LRRC27	Q9C0I9	530 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	KIAA1586	Q9HCI6	787 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	SERHL	Q9NQF3	203 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	NDRG4	Q9ULP0	352 aa	Known RBP	5.81	□□□□□ -1.48
CD44-223	ENST00000526553	SSX2IP	Q9Y2D8	614 aa		5.81	□□□□□ -1.48
CD44-223	ENST00000526553	TRIM43B	A6NCK2	446 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	GCOM1	H8Y6P7	765 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-223	ENST00000526553	PPM1D	O15297	605 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	SLC16A3	O15427	465 aa	Known RBP	5.8	□□□□□ -1.48
CD44-223	ENST00000526553	TLR5	O60602	858 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	PPFIA2	O75334	1257 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	BRAF	P15056	766 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	ZFX	P17010	805 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-223	ENST00000526553	RHCE	P18577	417 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	RHD	Q02161	417 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	BMPR2	Q13873	1038 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	E2F2	Q14209	437 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	TBCC	Q15814	346 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	KIAA0753	Q2KHM9	967 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	MGAT5B	Q3V5L5	792 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	PLAC9	Q5JTB6	97 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	DGKH	Q86XP1	1220 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	ADGRG3	Q86Y34	549 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	TRIM43	Q96BQ3	446 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-223	ENST00000526553	NMD3	Q96D46	503 aa	Known RBP	5.8	□□□□□ -1.48
CD44-223	ENST00000526553	APIP	Q96GX9	242 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	CRAMP1	Q96RY5	1269 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	TIMP4	Q99727	224 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	BHMT2	Q9H2M3	363 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	SEMA4G	Q9NTN9	838 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	STK32B	Q9NY57	414 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	CHPF2	Q9P2E5	772 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	SERTAD3	Q9UJW9	196 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	SH2B3	Q9UQQ2	575 aa		5.8	□□□□□ -1.48
CD44-223	ENST00000526553	MBD3L4	A6NDZ8	208 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	MBD3L3	A6NE82	208 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	LINC00473	A8K010	186 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	MGEA5	O60502	916 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	ELFN1	P0C7U0	828 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	MYF5	P13349	255 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	WT1	P19544	449 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	PCSK6	P29122	969 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	ELL	P55199	621 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	SUMO3	P55854	103 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	SOX10	P56693	466 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	MYO1E	Q12965	1108 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	CNGA2	Q16280	664 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	RGS7BP	Q6MZT1	257 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	PPP4R4	Q6NUP7	873 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	ZNF551	Q7Z340	670 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	ATG4A	Q8WYN0	398 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	NELL1	Q92832	810 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	BBC3	Q96PG8	261 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	MS4A7	Q9GZW8	240 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	R3HDML	Q9H3Y0	253 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	A1CF	Q9NQ94	594 aa	Known RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	CPNE7	Q9UBL6	633 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	DKK3	Q9UBP4	350 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	RGS17	Q9UGC6	210 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	AFF4	Q9UHB7	1163 aa	Known RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	COX11	Q9Y6N1	276 aa		5.79	□□□□□ -1.48
CD44-223	ENST00000526553	COL11A2	P13942	1736 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-223	ENST00000526553	TTLL1	O95922	423 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	ONECUT2	O95948	504 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	PDHA1	P08559	390 aa		5.78	□□□□□ -1.48
CD44-223	ENST00000526553	NR2F6	P10588	404 aa		5.78	□□□□□ -1.48

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