RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ZNF385DQ9H6B1 395 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 DCP1AQ9NPI6 582 aaPredicted RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 HEY2Q9UBP5 337 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 GTF3C4Q9UKN8 822 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 TDRKHQ9Y2W6 561 aaKnown RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 C15orf38-AP3S2A0A0A6YYH1 394 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 POTECB2RU33 542 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 TBX3O15119 743 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 ADCY8P40145 1251 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 PDE1CQ14123 709 aaPredicted RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 SEPT6Q14141 434 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 TRIP13Q15645 432 aaPredicted RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 KRT79Q5XKE5 535 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 RBM44Q6ZP01 1051 aaKnown RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 ARPINQ7Z6K5 226 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 FAM71AQ8IYT1 594 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 ATP11CQ8NB49 1132 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 SDR42E1Q8WUS8 393 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 PRR11Q96HE9 360 aaPredicted RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 MAK16Q9BXY0 300 aaKnown RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 TRIM55Q9BYV6 548 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 DHX33Q9H6R0 707 aaKnown RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 SLC38A7Q9NVC3 462 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 SCHIP1Q9P0W5 487 aaPredicted RBP8.78□□□□□ -1
CSMD1-213ENST00000523488 THEGQ9P2T0 379 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 TSC22D4Q9Y3Q8 395 aa8.78□□□□□ -1
CSMD1-213ENST00000523488 PRSS51A0A1B0GVH4 220 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ARHGAP42A6NI28 874 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ZNF195O14628 629 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 SPOPO43791 374 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 OR6B1O95007 311 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 SERPINA6P08185 405 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 CYP7A1P22680 504 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 CPA2P48052 419 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ARFIP2P53365 341 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ITGA8P53708 1063 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 CNTN2Q02246 1040 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 PPIDQ08752 370 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 GRSF1Q12849 480 aaKnown RBP eCLIP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 LPIN1Q14693 890 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 RNASEH2BQ5TBB1 312 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 NIPAL1Q6NVV3 410 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ZNF804AQ7Z570 1209 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ZMAT2Q96NC0 199 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 AGPAT1Q99943 283 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TAGLN3Q9UI15 199 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 COQ4Q9Y3A0 265 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 CLUHO75153 1309 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 MAGEB6P1A0A0J9YX57 407 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 EXOC1LA0A1B0GW35 172 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 B2RBV5 119 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 DNALI1O14645 258 aaPredicted RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 LSM1O15116 133 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 EEF2P13639 858 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 FDFT1P37268 417 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TMED10P49755 219 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 NR1H2P55055 460 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 GPX6P59796 221 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 KRT17Q04695 432 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 STX3Q13277 289 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 C1orf220Q5T0J3 134 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 C12orf60Q5U649 245 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 EEPD1Q7L9B9 569 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 FBXO33Q7Z6M2 555 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 C4orf33Q8N1A6 199 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ANKK1Q8NFD2 765 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ZNF420Q8TAQ5 688 aaPredicted RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 NSUN4Q96CB9 384 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 FAM89AQ96GI7 184 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TRABDQ9H4I3 376 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TAS2R14Q9NYV8 317 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ANAPC5Q9UJX4 755 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 SHOC2Q9UQ13 582 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TSC2P49815 1807 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 SLC22A2O15244 555 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 MAGEB3O15480 346 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ITM2AO43736 263 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TRMUO75648 421 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 CLPTM1O96005 669 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 COL6A2P12110 1019 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 MAGEA6P43360 314 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 TRPC1P48995 793 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 GPC5P78333 572 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 OVGP1Q12889 678 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 CBX2Q14781 532 aaPredicted RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 MORF4L2Q15014 288 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 RNF207Q6ZRF8 634 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 GLYCTKQ8IVS8 523 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 KATNAL2Q8IYT4 538 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ZCRB1Q8TBF4 217 aaKnown RBP8.77□□□□□ -1.01
CSMD1-213ENST00000523488 ETNPPLQ8TBG4 499 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 GPCPD1Q9NPB8 672 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 LRRC4BQ9NT99 713 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 APEX2Q9UBZ4 518 aa8.77□□□□□ -1.01
CSMD1-213ENST00000523488 BOLA2-SMG1P6H3BVE0 249 aa8.76□□□□□ -1.01
CSMD1-213ENST00000523488 GCATO75600 419 aa8.76□□□□□ -1.01
CSMD1-213ENST00000523488 FDX1P10109 184 aa8.76□□□□□ -1.01
CSMD1-213ENST00000523488 MAPTP10636 758 aaKnown RBP8.76□□□□□ -1.01
CSMD1-213ENST00000523488 MYL4P12829 197 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms