RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 LUC7L2Q9Y383 392 aaKnown RBP16.3■□□□□ 0.2
LSM1-203ENST00000520755 AKR1B15C9JRZ8 316 aaPredicted RBP16.29■□□□□ 0.2
LSM1-203ENST00000520755 PRRG1O14668 218 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 CYP26A1O43174 497 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 ABLIM3O94929 683 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 ELF1P32519 619 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 LTBRP36941 435 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 STAT1P42224 750 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 ADCY1Q08828 1119 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 COL19A1Q14993 1142 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 CLUL1Q15846 466 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 LIN9Q5TKA1 542 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 TPGS2Q68CL5 300 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 ELMSAN1Q6PJG2 1045 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 WDR59Q6PJI9 974 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 TMEM184AQ6ZMB5 413 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 LRRTM3Q86VH5 581 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 UNC93AQ86WB7 457 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 HLA-CQ95604 372 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 PKMYT1Q99640 499 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 APOL5Q9BWW9 433 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 UBE2ZQ9H832 354 aaPredicted RBP16.29■□□□□ 0.2
LSM1-203ENST00000520755 CYP4F11Q9HBI6 524 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 CRTAC1Q9NQ79 661 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 PRDM6Q9NQX0 595 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 TMLHEQ9NVH6 421 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 DZANK1Q9NVP4 752 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 AIPL1Q9NZN9 384 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 CLEC1BQ9P126 229 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 AFF4Q9UHB7 1163 aaKnown RBP16.29■□□□□ 0.2
LSM1-203ENST00000520755 DPP7Q9UHL4 492 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 GTF3C4Q9UKN8 822 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 COL6A3P12111 3177 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 ZNF638Q14966 1978 aaKnown RBP16.29■□□□□ 0.2
LSM1-203ENST00000520755 C2orf16Q68DN1 1984 aa16.29■□□□□ 0.2
LSM1-203ENST00000520755 PRUNE2Q8WUY3 3088 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 MYBPHLA2RUH7 354 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 MTMR11A4FU01 709 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 H3BQ06 376 aaPredicted RBP16.28■□□□□ 0.2
LSM1-203ENST00000520755 C1RP00736 705 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 C8AP07357 584 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 ATF2P15336 505 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 KCNA5P22460 613 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 HNRNPH3P31942 346 aaKnown RBP16.28■□□□□ 0.2
LSM1-203ENST00000520755 USP8P40818 1118 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 HGSNATQ68CP4 663 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 SMYD5Q6GMV2 418 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 ANKRD54Q6NXT1 300 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 IRF2BP2Q7Z5L9 587 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 ACOT1Q86TX2 421 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 SLC47A2Q86VL8 602 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 CNGA4Q8IV77 575 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 TTC39CQ8N584 583 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 C12orf76Q8N812 135 aaPredicted RBP16.28■□□□□ 0.2
LSM1-203ENST00000520755 ATAD1Q8NBU5 361 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 SLC7A14Q8TBB6 771 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 EPS8L1Q8TE68 723 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 PPP1R9BQ96SB3 815 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 SYT11Q9BT88 431 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 PLEKHA4Q9H4M7 779 aa16.28■□□□□ 0.2
LSM1-203ENST00000520755 ABI2Q9NYB9 513 aaPredicted RBP16.28■□□□□ 0.2
LSM1-203ENST00000520755 NOCTQ9UK39 431 aaKnown RBP16.28■□□□□ 0.2
LSM1-203ENST00000520755 OBSL1O75147 1896 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 RFPL2O75678 378 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 SEC24AO95486 1093 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 VNN2O95498 520 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 TPM1P09493 284 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 PTPN1P18031 435 aaKnown RBP16.27■□□□□ 0.2
LSM1-203ENST00000520755 FECHP22830 423 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 PRKCIP41743 596 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 CYP27A1Q02318 531 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 ARID5AQ03989 594 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 DUSP4Q13115 394 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 ASIC2Q16515 512 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 NFE2Q16621 373 aaPredicted RBP16.27■□□□□ 0.2
LSM1-203ENST00000520755 MEA1Q16626 185 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 MDH1BQ5I0G3 518 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 RARS2Q5T160 578 aaKnown RBP16.27■□□□□ 0.2
LSM1-203ENST00000520755 SFMBT2Q5VUG0 894 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 CCDC186Q7Z3E2 898 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 NOP9Q86U38 636 aaKnown RBP16.27■□□□□ 0.2
LSM1-203ENST00000520755 TMEM139Q8IV31 216 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 B3GALNT2Q8NCR0 500 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 HDAC7Q8WUI4 952 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 SLC20A1Q8WUM9 679 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 TFAP2BQ92481 460 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 DDX1Q92499 740 aaKnown RBP16.27■□□□□ 0.2
LSM1-203ENST00000520755 SYN2Q92777 582 aaPredicted RBP16.27■□□□□ 0.2
LSM1-203ENST00000520755 MYLPFQ96A32 169 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 TMEM176AQ96HP8 235 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 TNIP3Q96KP6 325 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 NT5C1AQ9BXI3 368 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 SFXN1Q9H9B4 322 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 COG5Q9UP83 839 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 SLC27A5Q9Y2P5 690 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 PCDHB5Q9Y5E4 795 aa16.27■□□□□ 0.2
LSM1-203ENST00000520755 XIRP2A4UGR9 3374 aa16.26■□□□□ 0.19
LSM1-203ENST00000520755 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 PLEKP08567 350 aaPredicted RBP16.26■□□□□ 0.19
LSM1-203ENST00000520755 PAEPP09466 180 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms