RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SAMSN1Q9NSI8 373 aaKnown RBP9.73□□□□□ -0.85
NUP54-207ENST00000508583 FANCLQ9NW38 375 aa9.73□□□□□ -0.85
NUP54-207ENST00000508583 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.73□□□□□ -0.85
NUP54-207ENST00000508583 ZMYM5Q9UJ78 669 aa9.73□□□□□ -0.85
NUP54-207ENST00000508583 GTF3C4Q9UKN8 822 aa9.73□□□□□ -0.85
NUP54-207ENST00000508583 KIAA1257Q9ULG3 409 aa9.73□□□□□ -0.85
NUP54-207ENST00000508583 DAAM1Q9Y4D1 1078 aa9.73□□□□□ -0.85
NUP54-207ENST00000508583 CLUHO75153 1309 aa9.73□□□□□ -0.85
NUP54-207ENST00000508583 MYBPHLA2RUH7 354 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 GALR2O43603 387 aaPredicted RBP9.72□□□□□ -0.85
NUP54-207ENST00000508583 CILPO75339 1184 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 MICAL2O94851 1124 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 SEC24AO95486 1093 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 CSH1P0DML2 217 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 CSH2P0DML3 217 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 BMP1P13497 986 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 CD58P19256 250 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 RAP1GAPP47736 663 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 MFAP3P55082 362 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 STILQ15468 1287 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 MDH1BQ5I0G3 518 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 SCARA3Q6AZY7 606 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 TRIM65Q6PJ69 517 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 PDZD4Q76G19 769 aaPredicted RBP9.72□□□□□ -0.85
NUP54-207ENST00000508583 LRRTM3Q86VH5 581 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 CRYBG2Q8N1P7 616 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 TDRD5Q8NAT2 981 aaKnown RBP9.72□□□□□ -0.85
NUP54-207ENST00000508583 PSMG2Q969U7 264 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 MYLPFQ96A32 169 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 ZNF707Q96C28 371 aaPredicted RBP9.72□□□□□ -0.85
NUP54-207ENST00000508583 PCED1BQ96HM7 432 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 TMEM209Q96SK2 561 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 PKMYT1Q99640 499 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 MED10Q9BTT4 135 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 FUCA2Q9BTY2 467 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 SDCBP2Q9H190 292 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.72□□□□□ -0.85
NUP54-207ENST00000508583 APEX2Q9UBZ4 518 aa9.72□□□□□ -0.85
NUP54-207ENST00000508583 VCANP13611 3396 aa9.71□□□□□ -0.85
NUP54-207ENST00000508583 RHOP08100 348 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 PAEPP09466 180 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 FAM200BP0CF97 657 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 IL9P15248 144 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 ZNF18P17022 549 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 FSHRP23945 695 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 CDC25CP30307 473 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 GRIK1P39086 918 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 PDE6CP51160 858 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 LRMPQ12912 555 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 KRT31Q15323 416 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 ARHGAP15Q53QZ3 475 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 HSP90AA4PQ58FG1 418 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 GRASPQ7Z6J2 395 aaPredicted RBP9.71□□□□□ -0.86
NUP54-207ENST00000508583 ACOT1Q86TX2 421 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 LMO3Q8TAP4 145 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 FEZF2Q8TBJ5 459 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 TATDN2Q93075 761 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 TMEM176AQ96HP8 235 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 SPATA17Q96L03 361 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 C8orf48Q96LL4 319 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 HEXIM2Q96MH2 286 aaKnown RBP9.71□□□□□ -0.86
NUP54-207ENST00000508583 UHRF1Q96T88 793 aaPredicted RBP9.71□□□□□ -0.86
NUP54-207ENST00000508583 CORO1BQ9BR76 489 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 GPR88Q9GZN0 384 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 DPEP3Q9H4B8 488 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 POMKQ9H5K3 350 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 DMAP1Q9NPF5 467 aaPredicted RBP9.71□□□□□ -0.86
NUP54-207ENST00000508583 CRTAC1Q9NQ79 661 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 GDE1Q9NZC3 331 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 LIMA1Q9UHB6 759 aaKnown RBP9.71□□□□□ -0.86
NUP54-207ENST00000508583 CDH22Q9UJ99 828 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 SLC27A5Q9Y2P5 690 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 MRPS23Q9Y3D9 190 aaKnown RBP9.71□□□□□ -0.86
NUP54-207ENST00000508583 C5orf42Q9H799 3197 aa9.71□□□□□ -0.86
NUP54-207ENST00000508583 C2orf16Q68DN1 1984 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 LRRC10BA6NIK2 292 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 LGALS16A8MUM7 142 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 MED7O43513 233 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 ATP2C2O75185 946 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 RTN3O95197 1032 aaPredicted RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 TPM3P06753 285 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 BDNFP23560 247 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 CYP2F1P24903 491 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 DDX6P26196 483 aaKnown RBP eCLIP9.7□□□□□ -0.86
NUP54-207ENST00000508583 PON1P27169 355 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 SSTR3P32745 418 aaPredicted RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 PPP3CCP48454 512 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 EPHA5P54756 1037 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 ZP2Q05996 745 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 SGO2Q562F6 1265 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 MIIPQ5JXC2 388 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 TMEM270Q6UE05 265 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 GET4Q7L5D6 327 aaPredicted RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 DNAJB7Q7Z6W7 309 aaPredicted RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 FAM35AQ86V20 835 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 FMNL3Q8IVF7 1028 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 SCN4BQ8IWT1 228 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 DHX40Q8IX18 779 aaKnown RBP9.7□□□□□ -0.86
NUP54-207ENST00000508583 ADAMTS19Q8TE59 1207 aa9.7□□□□□ -0.86
NUP54-207ENST00000508583 NXPE3Q969Y0 559 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms