RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TAF6P49848 677 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 ZNF75DP51815 510 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 GUCY2FP51841 1108 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 CASP5P51878 434 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 EPHB3P54753 998 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 STARD6P59095 220 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 GPC5P78333 572 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 KRT85P78386 507 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 PFKPQ01813 784 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 SURF1Q15526 300 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 PRSS36Q5K4E3 855 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 BRSK2Q8IWQ3 736 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 THEM5Q8N1Q8 247 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 FLCNQ8NFG4 579 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 GOLGA5Q8TBA6 731 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 ZNF507Q8TCN5 953 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 EXOC4Q96A65 974 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 ELSPBP1Q96BH3 223 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 CORO1BQ9BR76 489 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 FAM213AQ9BRX8 229 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 C1QTNF2Q9BXJ5 285 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 KLF16Q9BXK1 252 aaPredicted RBP8.62□□□□□ -1.03
SCN1A-207ENST00000507401 NUP62CLQ9H1M0 184 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.62□□□□□ -1.03
SCN1A-207ENST00000507401 CEP72Q9P209 647 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 PYCARDQ9ULZ3 195 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 PCDHA7Q9UN72 937 aa8.62□□□□□ -1.03
SCN1A-207ENST00000507401 TIMM13Q9Y5L4 95 aaPredicted RBP8.62□□□□□ -1.03
SCN1A-207ENST00000507401 PVALEFA0A1B0GWK0 134 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 GOLGA6L9A6NEM1 432 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ZNF233A6NK53 670 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 PROB1E7EW31 1015 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 PPEF2O14830 753 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 POLR2DO15514 142 aaKnown RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 PI15O43692 258 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 PRPF6O94906 941 aaKnown RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 VNN2O95498 520 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 FGF19O95750 216 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 SNRPBP14678 240 aaKnown RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 CASQ1P31415 396 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ALDH1A3P47895 512 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ME1P48163 572 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 PRKCQQ04759 706 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 EHHADHQ08426 723 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 TWF1Q12792 350 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 DUSP4Q13115 394 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 SLC5A9Q2M3M2 681 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 SV2CQ496J9 727 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 RESP18Q5W5W9 173 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 CWF19L1Q69YN2 538 aaKnown RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 TMCO3Q6UWJ1 677 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 UNC13DQ70J99 1090 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 PDZD4Q76G19 769 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 EPM2AIP1Q7L775 607 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ALYREFQ86V81 257 aaKnown RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 DRC7Q8IY82 874 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 EFCAB13Q8IY85 973 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 GPD1LQ8N335 351 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 LRRC52Q8N7C0 313 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 CCDC150Q8NCX0 1101 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 MNS1Q8NEH6 495 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 SPATA18Q8TC71 538 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 GPR152Q8TDT2 470 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 LRRN4Q8WUT4 740 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ATOH1Q92858 354 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 E2F7Q96AV8 911 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 DHX58Q96C10 678 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 MCRS1Q96EZ8 462 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ZNF560Q96MR9 790 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 MYCBPQ99417 103 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 NELL2Q99435 816 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 CBWD1Q9BRT8 395 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 DDX23Q9BUQ8 820 aaKnown RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 LRRC3Q9BY71 257 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 OSBPL6Q9BZF3 934 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ZCWPW1Q9H0M4 648 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 IKZF4Q9H2S9 585 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 TRPV4Q9HBA0 871 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ASAH2Q9NR71 780 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 ARHGEF3Q9NR81 526 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 GDAP2Q9NXN4 497 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 RBAKQ9NYW8 714 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-207ENST00000507401 WASF2Q9Y6W5 498 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 SCN1AP35498 2009 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 CACNA1HO95180 2353 aa8.61□□□□□ -1.03
SCN1A-207ENST00000507401 MTMR11A4FU01 709 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 KIF1CO43896 1103 aaKnown RBP8.6□□□□□ -1.03
SCN1A-207ENST00000507401 MOSPD3O75425 235 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 ADH1CP00326 375 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 FAM163BP0C2L3 166 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 CMA1P23946 247 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 WEE1P30291 646 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 HOXD13P35453 343 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 MLLT6P55198 1093 aaPredicted RBP8.6□□□□□ -1.03
SCN1A-207ENST00000507401 ASIC1P78348 528 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 RBP5P82980 135 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TFAMQ00059 246 aaKnown RBP8.6□□□□□ -1.03
SCN1A-207ENST00000507401 TUBB2AQ13885 445 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 DUOXA2Q1HG44 320 aa8.6□□□□□ -1.03
SCN1A-207ENST00000507401 SLC44A4Q53GD3 710 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms