RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 GTF3C4Q9UKN8 822 aa12.39□□□□□ -0.43
HMGCS1-204ENST00000507293 ZNF233A6NK53 670 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 GABRDO14764 452 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 KIAA0391O15091 583 aaKnown RBP12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 SPTLC2O15270 562 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 HRO43593 1189 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 TNNC2P02585 160 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 ARSAP15289 507 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 TGM1P22735 817 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 PCSK1P29120 753 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 HOXC13P31276 330 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 LHX1P48742 406 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 ASIC1P78348 528 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 LMNB2Q03252 620 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 SPEM2Q0P670 501 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 RUNX3Q13761 415 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 SIM2Q14190 667 aaPredicted RBP12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 E2F4Q16254 413 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 SOWAHAQ2M3V2 549 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 MON1AQ86VX9 555 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 LONP2Q86WA8 852 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 SPATA2LQ8IUW3 424 aaPredicted RBP12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 DHX58Q96C10 678 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 TRMT2BQ96GJ1 504 aaKnown RBP12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 FAM83CQ9BQN1 747 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 TRIM9Q9C026 710 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 LRRC27Q9C0I9 530 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 EBF3Q9H4W6 596 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 TDP1Q9NUW8 608 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 KBTBD4Q9NVX7 518 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 HSPBP1Q9NZL4 362 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 TFIP11Q9UBB9 837 aaKnown RBP12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 UXTQ9UBK9 157 aaPredicted RBP12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 R3HCC1Q9Y3T6 440 aaKnown RBP12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 DCHS1Q96JQ0 3298 aa12.38□□□□□ -0.43
HMGCS1-204ENST00000507293 OTOL1A6NHN0 477 aaPredicted RBP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 SOBPA7XYQ1 873 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 PPP6R2O75170 966 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 ATP2C2O75185 946 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 HOXD13P35453 343 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 PSMC1P62191 440 aaKnown RBP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 MYO1EQ12965 1108 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 ZNF268Q14587 947 aaPredicted RBP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 SURF1Q15526 300 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 CFAP221Q4G0U5 840 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 FSTL4Q6MZW2 842 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 CC2D1AQ6P1N0 951 aaPredicted RBP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 PKN3Q6P5Z2 889 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 SCN4BQ8IWT1 228 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 SYNPOQ8N3V7 929 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 KBTBD7Q8WVZ9 684 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 MYLPFQ96A32 169 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 CHFRQ96EP1 664 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 FUBP3Q96I24 572 aaKnown RBP eCLIP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 HPDLQ96IR7 371 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 MYRFLQ96LU7 910 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 ZNF396Q96N95 335 aaPredicted RBP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 SYT15Q9BQS2 421 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 BACH2Q9BYV9 841 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 CUEDC2Q9H467 287 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 TRPC7Q9HCX4 862 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 CDV3Q9UKY7 258 aaKnown RBP12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 SPAG17Q6Q759 2223 aa12.37□□□□□ -0.43
HMGCS1-204ENST00000507293 TRAV19A0A0A6YYK7 116 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 PRR5-ARHGAP8B1AHC4 643 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 EIF3DO15371 548 aaKnown RBP eCLIP12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 YEATS4O95619 227 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 RETP07949 1114 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 CNR2P34972 360 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 MAGEA11P43364 429 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 ARHGAP8P85298 464 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 FAM160A1Q05DH4 1040 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 GRSF1Q12849 480 aaKnown RBP eCLIP12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 MTF1Q14872 753 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 PDGFRLQ15198 375 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 DUOXA2Q1HG44 320 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 TMEM196Q5HYL7 178 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 FAM26FQ5R3K3 315 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 FOXD4L5Q5VV16 416 aaPredicted RBP12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 FAM171BQ6P995 826 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 SHC4Q6S5L8 630 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 EPM2AIP1Q7L775 607 aaPredicted RBP12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 DPH6Q7L8W6 267 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 WDR49Q8IV35 697 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 TTC16Q8NEE8 873 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 FOXD4L4Q8WXT5 416 aaPredicted RBP12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 SLC22A12Q96S37 553 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 CDH9Q9ULB4 789 aa12.36□□□□□ -0.43
HMGCS1-204ENST00000507293 TRDMT1O14717 391 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 TGFB1I1O43294 461 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 CUTAO60888 179 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 EGFP01133 1207 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 CKMP06732 381 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 USP17L7P0C7H9 530 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 SDHBP21912 280 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 WARSP23381 471 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 LMO2P25791 158 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 HOXA6P31267 233 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 ATXN1P54253 815 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms