RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 AGTPBP1Q9UPW5 1226 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SHOC2Q9UQ13 582 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 FARP1Q9Y4F1 1045 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 FAM47DPA6NHR8 397 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SIGLEC16A6NMB1 481 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 ERBB2P04626 1255 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 TAC1P20366 129 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 PSMC1P62191 440 aaKnown RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 YWHAEP62258 255 aaKnown RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 IRX3P78415 501 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 ELF3P78545 371 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SNCBQ16143 134 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 PKN2Q16513 984 aaKnown RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 ANKRD22Q5VYY1 191 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 TDRPQ86YL5 185 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 C1orf127Q8N9H9 656 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 RMDN2Q96LZ7 410 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SPATA33Q96N06 139 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 BCO2Q9BYV7 579 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 ASCC2Q9H1I8 757 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 LHX5Q9H2C1 402 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 SMYD3Q9H7B4 428 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 VPS37BQ9H9H4 285 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 METTL5Q9NRN9 209 aaKnown RBP10.37□□□□□ -0.75
CLIP1-204ENST00000501271 PRKAG3Q9UGI9 489 aa10.37□□□□□ -0.75
CLIP1-204ENST00000501271 ADM5C9JUS6 153 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ALOX15BO15296 676 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 MGRN1O60291 552 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CST8O60676 142 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 PDIA2Q13087 525 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 GALNTL6Q49A17 601 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ZNF667Q5HYK9 610 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 PPP1R21Q6ZMI0 780 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 XYLT1Q86Y38 959 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ANKMY2Q8IV38 441 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 GPC2Q8N158 579 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 SLC4A11Q8NBS3 891 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 OTUD5Q96G74 571 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ADAM33Q9BZ11 813 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ELP3Q9H9T3 547 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ARL2BPQ9Y2Y0 163 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CSADQ9Y600 493 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 A0A0G2JLL6 359 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 GPR25O00155 361 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CHUKO15111 745 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CSDE1O75534 798 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ASMTLO95671 621 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 KDELR1P24390 212 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 POLR2BP30876 1174 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CTCFP49711 727 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 GPX6P59796 221 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 NCALDP61601 193 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 MGAT5Q09328 741 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 MKRN3Q13064 507 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 TFDP1Q14186 410 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 MTFR1Q15390 333 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 TAF5Q15542 800 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 MSS51Q4VC12 460 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 EFCAB12Q6NXP0 572 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 BBS12Q6ZW61 710 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CENPUQ71F23 418 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 PRRT2Q7Z6L0 340 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 C4orf33Q8N1A6 199 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 FITM2Q8N6M3 262 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CCDC63Q8NA47 563 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 FNIP1Q8TF40 1166 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CPT1BQ92523 772 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 SPOCK2Q92563 424 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 MRRFQ96E11 262 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 PAIP2Q9BPZ3 127 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 WDR83Q9BRX9 315 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 ELOVL4Q9GZR5 314 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 TRABDQ9H4I3 376 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 RPF1Q9H9Y2 349 aaKnown RBP10.36□□□□□ -0.75
CLIP1-204ENST00000501271 GRID1Q9ULK0 1009 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 CLUHO75153 1309 aa10.36□□□□□ -0.75
CLIP1-204ENST00000501271 LACTBL1A8MY62 500 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 MED7O43513 233 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 ITGB3P05106 788 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 KRT7P08729 469 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 NR1H3Q13133 447 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 EFTUD2Q15029 972 aaKnown RBP eCLIP10.35□□□□□ -0.75
CLIP1-204ENST00000501271 TAZQ16635 292 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 HIF1AQ16665 826 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 Q3C1V9 767 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 JADE1Q6IE81 842 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 CCDC62Q6P9F0 684 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 FAM47EQ6ZV65 393 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 TBC1D1Q86TI0 1168 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-204ENST00000501271 DHX37Q8IY37 1157 aaKnown RBP10.35□□□□□ -0.75
CLIP1-204ENST00000501271 TAB3Q8N5C8 712 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-204ENST00000501271 ANKLE1Q8NAG6 615 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 NLGN2Q8NFZ4 835 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 CXorf38Q8TB03 319 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 DENND1AQ8TEH3 1009 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 CLMNQ96JQ2 1002 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PPP1R16BQ96T49 567 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 SYNCQ9H7C4 482 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PCSK1NQ9UHG2 260 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PNMA3Q9UL41 463 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms