RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 OR1G1P47890 313 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 ALDH7A1P49419 539 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 YWHAHQ04917 246 aaPredicted RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 DSC1Q08554 894 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PTP4A2Q12974 167 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 NFE2Q16621 373 aaPredicted RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 GOLGA7BQ2TAP0 167 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 EFHC1Q5JVL4 640 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 LRRC38Q5VT99 294 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 WSCD1Q658N2 575 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 OVOS1Q6IE37 1185 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 DENND1BQ6P3S1 775 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 ARCQ7LC44 396 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 DCP1BQ8IZD4 617 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 LRRC43Q8N309 656 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 GPR161Q8N6U8 529 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 OLIG1Q8TAK6 271 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 KBTBD7Q8WVZ9 684 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 RUBCNQ92622 972 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 ARHGEF26Q96DR7 871 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PAWRQ96IZ0 340 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 MED10Q9BTT4 135 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 DUSP16Q9BY84 665 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 GOLGA2P5Q9HBQ8 144 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PRDM10Q9NQV6 1147 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 HOMER3Q9NSC5 361 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 ASNSD1Q9NWL6 643 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 DDX56Q9NY93 547 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 TBX21Q9UL17 535 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 TTC7AQ9ULT0 858 aaPredicted RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PCDHB8Q9UN66 801 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 FAN1Q9Y2M0 1017 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PCDHA3Q9Y5H8 950 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 FRMPD3Q5JV73 1810 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 SF3B1O75533 1304 aaKnown RBP eCLIP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 TMEM191CA6NGB0 347 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 MEIS3P2A8K0S8 358 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 H7C4K7 107 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 PPEF2O14830 753 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 XPO1O14980 1071 aaKnown RBP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 KIAA0355O15063 1070 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 SPTLC1O15269 473 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 CEP104O60308 925 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 ERBB2P04626 1255 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 GLI1P08151 1106 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 NPR3P17342 541 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 CTNNA2P26232 953 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 CTNNA1P35221 906 aaKnown RBP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 SSR1P43307 286 aaKnown RBP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 CCL23P55773 120 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 PPP1R26Q5T8A7 1209 aaPredicted RBP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 ZNF572Q7Z3I7 529 aaPredicted RBP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 TMEM110Q86TL2 294 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 RTN4RL1Q86UN2 441 aaPredicted RBP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 COLGALT2Q8IYK4 626 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 NIPA2Q8N8Q9 360 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 CCDC26Q8TAB7 109 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 MYCBPAPQ8TBZ2 947 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 SLC35F5Q8WV83 523 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 KCTD13Q8WZ19 329 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 SMARCD1Q96GM5 515 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 CAPZA3Q96KX2 299 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 TWNKQ96RR1 684 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 SYT15Q9BQS2 421 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 ZSWIM1Q9BR11 485 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 PPP1R12CQ9BZL4 782 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 LRRC4Q9HBW1 653 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 AAASQ9NRG9 546 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 TBC1D13Q9NVG8 400 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 MIOSQ9NXC5 875 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 FEZ2Q9UHY8 353 aaPredicted RBP8.91□□□□□ -0.98
SF3A1-210ENST00000498259 COG5Q9UP83 839 aa8.91□□□□□ -0.98
SF3A1-210ENST00000498259 OR6C75A6NL08 312 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 TMEM110-MUSTN1A8MSY1 372 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 ERLIN1O75477 346 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 OAZ2O95190 189 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 ZRANB2O95218 330 aaKnown RBP eCLIP8.9□□□□□ -0.98
SF3A1-210ENST00000498259 CYP2C18P33260 490 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 PLA2G4AP47712 749 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 COPS2P61201 443 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 SLC6A3Q01959 620 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MAP9Q49MG5 647 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 TIGD5Q53EQ6 642 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 CLLU1OSQ5K130 101 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 ZFYVE27Q5T4F4 411 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 FAM102AQ5T9C2 384 aaPredicted RBP8.9□□□□□ -0.98
SF3A1-210ENST00000498259 OR6B2Q6IFH4 312 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MFSD5Q6N075 450 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MAATS1Q7Z4T9 603 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 POLNQ7Z5Q5 900 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MTERF4Q7Z6M4 381 aaKnown RBP8.9□□□□□ -0.98
SF3A1-210ENST00000498259 DEFB128Q7Z7B8 93 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 CREG2Q8IUH2 290 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 MAP7D3Q8IWC1 876 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 RCOR2Q8IZ40 523 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 SIX6OS1Q8N1H7 587 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 WDTC1Q8N5D0 677 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 C12orf29Q8N999 325 aa8.9□□□□□ -0.98
SF3A1-210ENST00000498259 SPATA4Q8NEY3 305 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms