RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 F5H423 210 aaPredicted RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 INPP4BO15327 924 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 INPPL1O15357 1258 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 ORC4O43929 436 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SYNCRIPO60506 623 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 CKBP12277 381 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 PSMA5P28066 241 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 ALDH1A3P47895 512 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SULT1E1P49888 294 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CSNK2BP67870 215 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 PPP2R2BQ00005 443 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CKAP4Q07065 602 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 SAFBQ15424 915 aaKnown RBP eCLIP5.38□□□□□ -1.55
USP54-216ENST00000498143 FHL5Q5TD97 284 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CCDC81Q6ZN84 652 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 KRT74Q7RTS7 529 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 KDELC2Q7Z4H8 507 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CPLX4Q7Z7G2 160 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CMTR2Q8IYT2 770 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 C3orf20Q8ND61 904 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 DDHD1Q8NEL9 900 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CFAP61Q8NHU2 1237 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SCG3Q8WXD2 468 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 MAML1Q92585 1016 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 RNF34Q969K3 372 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TMX3Q96JJ7 454 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 FGD4Q96M96 766 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CARD9Q9H257 536 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 ELAC1Q9H777 363 aaKnown RBP5.38□□□□□ -1.55
USP54-216ENST00000498143 KANSL3Q9P2N6 904 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 TLK1Q9UKI8 766 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 SH3GLB1Q9Y371 365 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 PCDHB6Q9Y5E3 794 aa5.38□□□□□ -1.55
USP54-216ENST00000498143 CEMIPQ8WUJ3 1361 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 F5H6K3 240 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 SPATA31D3P0C874 917 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ZNF286BP0CG31 522 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ZSCAN22P10073 491 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 ZNF24P17028 368 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 KLRC3Q07444 240 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ACAP2Q15057 778 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 LYSMD4Q5XG99 296 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 CORO6Q6QEF8 472 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 SPATA31D4Q6ZUB0 917 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 HSPH1Q92598 858 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 RRP36Q96EU6 259 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 NUP88Q99567 741 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 C2orf49Q9BVC5 232 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 KMT5AQ9NQR1 393 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ACAD8Q9UKU7 415 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 NOC2LQ9Y3T9 749 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 V9GYQ6 96 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 DOT1LQ8TEK3 1739 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 TMEM110-MUSTN1A8MSY1 372 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 NT5C1B-RDH14C9J2C7 533 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 TEX28O15482 410 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 SYT1P21579 422 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ME1P48163 572 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 LBRQ14739 615 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 CASP8Q14790 479 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ZNF174Q15697 407 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 UAP1Q16222 522 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 HSP90AA4PQ58FG1 418 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 KCNT2Q6UVM3 1135 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 GPT2Q8TD30 523 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 PSPC1Q8WXF1 523 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 ING5Q8WYH8 240 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 RABGGTAQ92696 567 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 KIFAP3Q92845 792 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ART5Q96L15 291 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 TEPSINQ96N21 525 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 QKIQ96PU8 341 aaKnown RBP eCLIP5.37□□□□□ -1.55
USP54-216ENST00000498143 KXD1Q9BQD3 176 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 USP29Q9HBJ7 922 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 IL1RAPL2Q9NP60 686 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 NOP53Q9NZM5 478 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 FTSJ1Q9UET6 329 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ZNF112Q9UJU3 913 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 SNX8Q9Y5X2 465 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 FAM169AQ9Y6X4 670 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 POLQO75417 2590 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ARHGEF37A1IGU5 675 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 CCDC151A5D8V7 595 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 E2F3O00716 465 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 SEC31AO94979 1220 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 EOMESO95936 686 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 RECKO95980 971 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 KRT19P08727 400 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 UBASH3AP57075 661 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ETF1P62495 437 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 CNTN2Q02246 1040 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 LRMPQ12912 555 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 CBX3Q13185 183 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 RASA2Q15283 850 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 LONRF2Q1L5Z9 754 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 CHTF18Q8WVB6 975 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 UCMAQ8WVF2 138 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 KCNE4Q8WWG9 221 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 C8orf48Q96LL4 319 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms