RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, human

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-215	ENST00000497139	RNF111	Q6ZNA4	994 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	SLC15A3	Q8IY34	581 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	KATNAL2	Q8IYT4	538 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	RTKN2	Q8IZC4	609 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	GSTCD	Q8NEC7	633 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	TMEM174	Q8WUU8	243 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	SPIRE2	Q8WWL2	714 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	PAFAH2	Q99487	392 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	EYA3	Q99504	573 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	HERPUD2	Q9BSE4	406 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	HAUS8	Q9BT25	410 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	BTG4	Q9NY30	223 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	TMEM98	Q9Y2Y6	226 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	ZNF711	Q9Y462	761 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	MYH11	P35749	1972 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	TRIM49	P0CI25	452 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	TRIM49C	P0CI26	452 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	RALA	P11233	206 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	PML	P29590	882 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	NUP107	P57740	925 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	KDSR	Q06136	332 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	NCOA4	Q13772	614 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	CCNI	Q14094	377 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	EPC2	Q52LR7	807 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	CIAPIN1	Q6FI81	312 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	TMEM110	Q86TL2	294 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	SLC26A7	Q8TE54	656 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	HSPBAP1	Q96EW2	488 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	MRPL1	Q9BYD6	325 aa	Known RBP	13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	GRIP2	Q9C0E4	1043 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	STN1	Q9H668	368 aa	Known RBP	13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	AGPAT3	Q9NRZ7	376 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	RSL24D1	Q9UHA3	163 aa	Known RBP	13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	ANAPC7	Q9UJX3	599 aa		13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	DRG1	Q9Y295	367 aa	Known RBP	13.59	□□□□□ -0.23
VEGFA-215	ENST00000497139	FAM237B	A0A1B0GVD1	139 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139		H3BNX3	289 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	MAGEB3	O15480	346 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	ADCY3	O60266	1144 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	SGPL1	O95470	568 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	MT-ND3	P03897	115 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	SPATA31C1	P0DKV0	1188 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	FDX1	P10109	184 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	CDK9	P50750	372 aa	Known RBP	13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	FASTKD3	Q14CZ7	662 aa	Known RBP	13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	C16orf86	Q6ZW13	317 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	EXD1	Q8NHP7	514 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	DCAKD	Q8WVC6	231 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	PRPF31	Q8WWY3	499 aa	Known RBP	13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	CEPT1	Q9Y6K0	416 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	SQOR	Q9Y6N5	450 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	DNAJA2	O60884	412 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	FAM13A	O94988	1023 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	BGN	P21810	368 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	ACAT1	P24752	427 aa	Known RBP	13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	KCNA1	Q09470	495 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	UBE2S	Q16763	222 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	RNASEH2B	Q5TBB1	312 aa	Known RBP	13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	ARHGEF19	Q8IW93	802 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	RHOT1	Q8IXI2	618 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	ACTRT2	Q8TDY3	377 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	APBB2	Q92870	758 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	SLC4A9	Q96Q91	983 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	TSPAN18	Q96SJ8	248 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	ITGA11	Q9UKX5	1188 aa		13.58	□□□□□ -0.24
VEGFA-215	ENST00000497139	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.57	□□□□□ -0.24	6e-7	■■■■■ 31.1
VEGFA-215	ENST00000497139	DCAF8L1	A6NGE4	600 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	ARHGAP42	A6NI28	874 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	BOLA2-SMG1P6	H3BVE0	249 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	PCSK6	P29122	969 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	GPX6	P59796	221 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	PSMC6	P62333	389 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	BCL2A1	Q16548	175 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	LRRC36	Q1X8D7	754 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	GRAMD1B	Q3KR37	738 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	DZIP1	Q86YF9	867 aa	Known RBP	13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	SLC25A41	Q8N5S1	370 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	CCT7	Q99832	543 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	EIF2A	Q9BY44	585 aa	Known RBP	13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	CHORDC1	Q9UHD1	332 aa	Predicted RBP	13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	ZBTB1	Q9Y2K1	713 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	TAF1L	Q8IZX4	1826 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	ASTN2	O75129	1339 aa	Predicted RBP	13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	USP17L5	A8MUK1	530 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	RSPH10B2	B2RC85	870 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	LIAS	O43766	372 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	KLHL2	O95198	593 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	FAM58BP	P0C7Q3	252 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	RSPH10B	P0C881	870 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	SNHG28	P0DPA3	235 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	PRDX5	P30044	214 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	ALDH1A3	P47895	512 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	PPP4C	P60510	307 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	RELA	Q04206	551 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	WASHC5	Q12768	1159 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	PDAP1	Q13442	181 aa	Known RBP	13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	HIF1A	Q16665	826 aa		13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	RWDD4	Q6NW29	188 aa	Known RBP	13.57	□□□□□ -0.24
VEGFA-215	ENST00000497139	TMEM53	Q6P2H8	277 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms