RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CLYBLQ8N0X4 340 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 TFB1MQ8WVM0 346 aaKnown RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 ATXN3LQ9H3M9 355 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 WDR41Q9HAD4 459 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 RPRD1BQ9NQG5 326 aaKnown RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 NOP53Q9NZM5 478 aaKnown RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 PDZK1P1A8MUH7 402 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 CBX4O00257 560 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 ZNF200P98182 395 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 DHX34Q14147 1143 aaKnown RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 LUZP2Q86TE4 346 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 ERO1BQ86YB8 467 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 ADGRF2Q8IZF7 708 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 ZNF669Q96BR6 464 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 FAM136AQ96C01 138 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 RNF208Q9H0X6 261 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 SPATS2LQ9NUQ6 558 aaKnown RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 VPS9D1Q9Y2B5 631 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 PBRM1Q86U86 1689 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 DGKIO75912 1065 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 TOMM70O94826 608 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 CLCN3P51790 818 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 TGM3Q08188 693 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 TRIP4Q15650 581 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 ALX1Q15699 326 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 EXD1Q8NHP7 514 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 NLNQ9BYT8 704 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 KCNH7Q9NS40 1196 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 EVA1BQ9NVM1 165 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 TDRKHQ9Y2W6 561 aaKnown RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 ANXA9O76027 345 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 SERPINB9P50453 376 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 MAP3K7CLP57077 242 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 RALGDSQ12967 914 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 PGS1Q32NB8 556 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 PPM1LQ5SGD2 360 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 RINLQ6ZS11 566 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 TAF1DQ9H5J8 278 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 PADI4Q9UM07 663 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 RPS6P62753 249 aaKnown RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 TRIM32Q13049 653 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 PLD1Q13393 1074 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 PDIA5Q14554 519 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 COMMD2Q86X83 199 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 PCYOX1LQ8NBM8 494 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 SGF29Q96ES7 293 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 STK33Q9BYT3 514 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 PAK5Q9P286 719 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 AMACRQ9UHK6 382 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 NUDT14O95848 222 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 THP07101 528 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ENO2P09104 434 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ZNF286BP0CG31 522 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 GGCXP38435 758 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 SERPINB10P48595 397 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ATP2C1P98194 919 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 FNDC3BQ53EP0 1204 aaKnown RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ALKBH2Q6NS38 261 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 TRMT11Q7Z4G4 463 aaKnown RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 DEPDC7Q96QD5 511 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 KCTD10Q9H3F6 313 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 WDR19Q8NEZ3 1342 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 EIF4E1BA6NMX2 242 aaKnown RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 NFICP08651 508 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 FOXO4P98177 505 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 STAT4Q14765 748 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 FUT11Q495W5 492 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 MAP1SQ66K74 1059 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ACSF2Q96CM8 615 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 EIF3LQ9Y262 564 aaKnown RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 TSPAN3O60637 253 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 CLCN6P51797 869 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 GEMP55040 296 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 GSTA3Q16772 222 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ZNF484Q5JVG2 852 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 OTOAQ7RTW8 1153 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 SLC16A10Q8TF71 515 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 PITPNM2Q9BZ72 1349 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ARHGAP31Q2M1Z3 1444 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ATMINO43313 823 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 POMCP01189 267 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 EPC2Q52LR7 807 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 LINC00523Q86TU6 105 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ACOT1Q86TX2 421 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 MYO1HQ8N1T3 1032 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 TNIP2Q8NFZ5 429 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 VPS50Q96JG6 964 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 XPO6Q96QU8 1125 aaKnown RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 UBXN6Q9BZV1 441 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ZFYVE1Q9HBF4 777 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 KRT84Q9NSB2 600 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 SYBUQ9NX95 663 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 STOML1Q9UBI4 398 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 TTC26A0AVF1 554 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 VGLL3A8MV65 326 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 TEX33O43247 280 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 ZNF500O60304 480 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 SP100P23497 879 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-212ENST00000491769 GALNTL6Q49A17 601 aa13.64□□□□□ -0.23
COL6A3-212ENST00000491769 PREPLQ4J6C6 727 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms