RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 NFKBIBQ15653 356 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 ITPRIPL2Q3MIP1 535 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 KMT5BQ4FZB7 885 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 LAIR1Q6GTX8 287 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 CC2D1AQ6P1N0 951 aaPredicted RBP11.12□□□□□ -0.63
TTC28-207ENST00000490475 NELFCDQ8IXH7 590 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 EFCAB13Q8IY85 973 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 CMTM8Q8IZV2 173 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 GPD1LQ8N335 351 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 TOP6BLQ8N6T0 577 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 CCDC26Q8TAB7 109 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 ZNF507Q8TCN5 953 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 SCFD1Q8WVM8 642 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 PCIF1Q9H4Z3 704 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 AGAP1Q9UPQ3 857 aa11.12□□□□□ -0.63
TTC28-207ENST00000490475 GOLGA8IPA6NC78 632 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 ZNF233A6NK53 670 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 SHISA7A6NL88 538 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 GOLGA8JA6NMD2 632 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 SLC38A8A6NNN8 435 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 TULP1O00294 542 aaPredicted RBP11.11□□□□□ -0.63
TTC28-207ENST00000490475 EIF3DO15371 548 aaKnown RBP eCLIP11.11□□□□□ -0.63
TTC28-207ENST00000490475 PRPF40AO75400 957 aaKnown RBP11.11□□□□□ -0.63
TTC28-207ENST00000490475 TNNC2P02585 160 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 ITGB3P05106 788 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 PFKLP17858 780 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 ATF6P18850 670 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 POLR2BP30876 1174 aaKnown RBP11.11□□□□□ -0.63
TTC28-207ENST00000490475 FAM160A1Q05DH4 1040 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 PNOCQ13519 176 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 ZNF268Q14587 947 aaPredicted RBP11.11□□□□□ -0.63
TTC28-207ENST00000490475 CFAP221Q4G0U5 840 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 C4orf50Q6ZRC1 276 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 PDCL2Q8N4E4 241 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 CSGALNACT2Q8N6G5 542 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 C1orf127Q8N9H9 656 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 SAAL1Q96ER3 474 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 TRMT2BQ96GJ1 504 aaKnown RBP11.11□□□□□ -0.63
TTC28-207ENST00000490475 TMEM209Q96SK2 561 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 LPIN3Q9BQK8 851 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 CBWD1Q9BRT8 395 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 MKNK1Q9BUB5 465 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 TDP1Q9NUW8 608 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 EXOC1Q9NV70 894 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 DDX43Q9NXZ2 648 aaKnown RBP11.11□□□□□ -0.63
TTC28-207ENST00000490475 DLL3Q9NYJ7 618 aa11.11□□□□□ -0.63
TTC28-207ENST00000490475 FRYLO94915 3013 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 CCDC163A0A0D9SF12 145 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 TGFB1I1O43294 461 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 MYL1P05976 194 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 RETP07949 1114 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 KRT19P08727 400 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 FAM163BP0C2L3 166 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 TDGF1P13385 188 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 NLRP12P59046 1061 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 GRSF1Q12849 480 aaKnown RBP eCLIP11.1□□□□□ -0.63
TTC28-207ENST00000490475 PSMD2Q13200 908 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 PDGFRLQ15198 375 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 DUOXA2Q1HG44 320 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 FBXO43Q4G163 708 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 INTS6LQ5JSJ4 861 aaKnown RBP11.1□□□□□ -0.63
TTC28-207ENST00000490475 STXBP5Q5T5C0 1151 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 LRRTM3Q86VH5 581 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 MON1AQ86VX9 555 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 LONP2Q86WA8 852 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 SPATA2LQ8IUW3 424 aaPredicted RBP11.1□□□□□ -0.63
TTC28-207ENST00000490475 TTC9BQ8N6N2 239 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 NOC3LQ8WTT2 800 aaKnown RBP11.1□□□□□ -0.63
TTC28-207ENST00000490475 ERCC4Q92889 916 aaPredicted RBP11.1□□□□□ -0.63
TTC28-207ENST00000490475 RMDN1Q96DB5 314 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 MYRFLQ96LU7 910 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 IL21Q9HBE4 155 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 CGNQ9P2M7 1197 aaKnown RBP11.1□□□□□ -0.63
TTC28-207ENST00000490475 SNX9Q9Y5X1 595 aa11.1□□□□□ -0.63
TTC28-207ENST00000490475 UBE4BO95155 1302 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 GABRDO14764 452 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 CLIC2O15247 247 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 SOAT2O75908 522 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 F11P03951 625 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 MAGEA11P43364 429 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 PPP3CCP48454 512 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 CYP4F8P98187 520 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 NR1H3Q13133 447 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 RUNX3Q13761 415 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 CCINQ13939 588 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 TSSK4Q6SA08 328 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 VSTM1Q6UX27 236 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 WDR49Q8IV35 697 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 ADGRF2Q8IZF7 708 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 KIAA1958Q8N8K9 716 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 MAB21L3Q8N8X9 362 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 KIAA0895Q8NCT3 520 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 GIPC2Q8TF65 315 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 RTKNQ9BST9 563 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 SLC46A2Q9BY10 475 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 INTS13Q9NVM9 706 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 GTSE1Q9NYZ3 720 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 CDV3Q9UKY7 258 aaKnown RBP11.09□□□□□ -0.63
TTC28-207ENST00000490475 CDH9Q9ULB4 789 aa11.09□□□□□ -0.63
TTC28-207ENST00000490475 L1RE1Q9UN81 338 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms