RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 VCAM1P19320 739 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 CERS1P27544 350 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 EPHB2P29323 1055 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 MPGP29372 298 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 CYP2C18P33260 490 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 VIPR2P41587 438 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 PXNP49023 591 aaPredicted RBP3.96□□□□□ -1.78
CPSF3-205ENST00000489629 CYP4F2P78329 520 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 AMOTQ4VCS5 1084 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 CEP78Q5JTW2 689 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 PCID2Q5JVF3 399 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 ATAT1Q5SQI0 421 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 ARHGAP40Q5TG30 622 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 PRAMEF17Q5VTA0 474 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 LAYNQ6UX15 382 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 PARS2Q7L3T8 475 aaKnown RBP3.96□□□□□ -1.78
CPSF3-205ENST00000489629 ZBTB46Q86UZ6 589 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 FANCBQ8NB91 859 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 CDK5RAP3Q96JB5 506 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 MRGPRX1Q96LB2 322 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 QTRT1Q9BXR0 403 aaKnown RBP3.96□□□□□ -1.78
CPSF3-205ENST00000489629 BRINP2Q9C0B6 783 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 XPR1Q9UBH6 696 aa3.96□□□□□ -1.78
CPSF3-205ENST00000489629 PRRT4C9JH25 899 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 QSOX1O00391 747 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 PPP6CO00743 305 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 TUBB4AP04350 444 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 FESP07332 822 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 GRPP07492 148 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 ENGP17813 658 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 SFPQP23246 707 aaKnown RBP eCLIP3.95□□□□□ -1.78
CPSF3-205ENST00000489629 NEK2P51955 445 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 KLF9Q13886 244 aaPredicted RBP3.95□□□□□ -1.78
CPSF3-205ENST00000489629 KHDC1LQ5JSQ8 128 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 RGS7BPQ6MZT1 257 aaPredicted RBP3.95□□□□□ -1.78
CPSF3-205ENST00000489629 YTHDF3Q7Z739 585 aaKnown RBP3.95□□□□□ -1.78
CPSF3-205ENST00000489629 PCSK9Q8NBP7 692 aaKnown RBP3.95□□□□□ -1.78
CPSF3-205ENST00000489629 RP9Q8TA86 221 aaKnown RBP3.95□□□□□ -1.78
CPSF3-205ENST00000489629 GLG1Q92896 1179 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 CGRRF1Q99675 332 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 MACROD1Q9BQ69 325 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 THAP7Q9BT49 309 aaPredicted RBP3.95□□□□□ -1.78
CPSF3-205ENST00000489629 SLC12A5Q9H2X9 1139 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 STXBP5LQ9Y2K9 1186 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 MED16Q9Y2X0 877 aa3.95□□□□□ -1.78
CPSF3-205ENST00000489629 A1L4Q6 167 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 SMIM22K7EJ46 135 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 ABLIM3O94929 683 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 CSF1RP07333 972 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 CYP2D6P10635 497 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 HOXA4Q00056 320 aaPredicted RBP3.94□□□□□ -1.78
CPSF3-205ENST00000489629 E2F2Q14209 437 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 SUPT20HL1Q3ZLR7 823 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 CCDC157Q569K6 752 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 MORN5Q5VZ52 161 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 SLC18B1Q6NT16 456 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 NAPRTQ6XQN6 538 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 CATSPERGQ6ZRH7 1159 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 Q6ZWC4 215 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 CHSY1Q86X52 802 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 ZNF366Q8N895 744 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 RPL36ALQ969Q0 106 aaKnown RBP3.94□□□□□ -1.78
CPSF3-205ENST00000489629 HOOK2Q96ED9 719 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 C1GALT1C1Q96EU7 318 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 MOGAT1Q96PD6 335 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 MAP3K14Q99558 947 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 SH2D3AQ9BRG2 576 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 MESP1Q9BRJ9 268 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 BHMT2Q9H2M3 363 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 GLOD4Q9HC38 313 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 SARS2Q9NP81 518 aaKnown RBP3.94□□□□□ -1.78
CPSF3-205ENST00000489629 GABRQQ9UN88 632 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 ADAMTS5Q9UNA0 930 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 ANKRD6Q9Y2G4 727 aa3.94□□□□□ -1.78
CPSF3-205ENST00000489629 A0A088AWK7 358 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 PROB1E7EW31 1015 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 hCG_1984214I3L0E3 225 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 MOSPD3O75425 235 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 THP07101 528 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 PF4V1P10720 104 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 KCNJ5P48544 419 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 SLC11A2P49281 568 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 UCP3P55916 312 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 MYO1EQ12965 1108 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 ETFDHQ16134 617 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 PTPROQ16827 1216 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 ZIK1Q3SY52 487 aaPredicted RBP3.93□□□□□ -1.78
CPSF3-205ENST00000489629 GRAMD1CQ8IYS0 662 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 LRRC71Q8N4P6 559 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 ZCRB1Q8TBF4 217 aaKnown RBP3.93□□□□□ -1.78
CPSF3-205ENST00000489629 DIS3LQ8TF46 1054 aaKnown RBP3.93□□□□□ -1.78
CPSF3-205ENST00000489629 SOCS4Q8WXH5 440 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 R3HDM4Q96D70 268 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 GPATCH3Q96I76 525 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 ZNF48Q96MX3 618 aaPredicted RBP3.93□□□□□ -1.78
CPSF3-205ENST00000489629 ARMT1Q9H993 441 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 IP6K2Q9UHH9 426 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 SHOC2Q9UQ13 582 aa3.93□□□□□ -1.78
CPSF3-205ENST00000489629 MRPS17Q9Y2R5 130 aaKnown RBP3.93□□□□□ -1.78
CPSF3-205ENST00000489629 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms