RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 SDCBP2Q9H190 292 aa22.61■■□□□ 1.21
LIME1-207ENST00000489212 KINO60870 393 aaKnown RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 HLA-DRAP01903 254 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 F11P03951 625 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 CDC25CP30307 473 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 MAGEA11P43364 429 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 GCLMP48507 274 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 PMS1P54277 932 aaKnown RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 MCCD1P59942 119 aaPredicted RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 RPL10AP62906 217 aaKnown RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 SLC44A4Q53GD3 710 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 MDH1BQ5I0G3 518 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 SCARA5Q6ZMJ2 495 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 C4orf50Q6ZRC1 276 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 ARID3BQ8IVW6 561 aaPredicted RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 SCN4BQ8IWT1 228 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 FAM122AQ96E09 287 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 PCED1BQ96HM7 432 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 CHMP5Q9NZZ3 219 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 MAGEC2Q9UBF1 373 aaPredicted RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 HOOK1Q9UJC3 728 aaKnown RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 MAN1B1Q9UKM7 699 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 MAGED2Q9UNF1 606 aaPredicted RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 OBSL1O75147 1896 aa22.6■■□□□ 1.21
LIME1-207ENST00000489212 NUP210Q8TEM1 1887 aaPredicted RBP22.6■■□□□ 1.21
LIME1-207ENST00000489212 F5P12259 2224 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 SLC38A8A6NNN8 435 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 HEPACAM2A8MVW5 462 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 NOL4O94818 638 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 CSH1P0DML2 217 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 CSH2P0DML3 217 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 PTPN1P18031 435 aaKnown RBP22.59■■□□□ 1.21
LIME1-207ENST00000489212 BDNFP23560 247 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 NLRP12P59046 1061 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 STARD6P59095 220 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 PFKPQ01813 784 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 CYP27A1Q02318 531 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 MAPRE1Q15691 268 aaKnown RBP22.59■■□□□ 1.21
LIME1-207ENST00000489212 MLF2Q15773 248 aaPredicted RBP22.59■■□□□ 1.21
LIME1-207ENST00000489212 SGSM1Q2NKQ1 1148 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 ISM2Q6H9L7 571 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 SPOPLQ6IQ16 392 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 PHLDB3Q6NSJ2 640 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 ADSSL1Q8N142 457 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 LRRC3BQ96PB8 259 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 TRMT61BQ9BVS5 477 aaKnown RBP22.59■■□□□ 1.21
LIME1-207ENST00000489212 TASP1Q9H6P5 420 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 GREB1Q4ZG55 1949 aa22.59■■□□□ 1.21
LIME1-207ENST00000489212 A8MXQ7 604 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 STK25O00506 426 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 TADA3O75528 432 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 CLSTN1O94985 981 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 ASS1P00966 412 aaKnown RBP22.58■■□□□ 1.21
LIME1-207ENST00000489212 KRT13P13646 458 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 PSMC3P17980 439 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 PIK3CAP42336 1068 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 ENPEPQ07075 957 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 ARHGAP15Q53QZ3 475 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 ANKRD40Q6AI12 368 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 MFSD6LQ8IWD5 586 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 ZC3H3Q8IXZ2 948 aaKnown RBP22.58■■□□□ 1.21
LIME1-207ENST00000489212 TAS1R2Q8TE23 839 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 GCNAQ96QF7 691 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 PRRX2Q99811 253 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 SLC46A2Q9BY10 475 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 FOXQ1Q9C009 403 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 MMRN2Q9H8L6 949 aa22.58■■□□□ 1.21
LIME1-207ENST00000489212 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.58■■□□□ 1.212e-6■■■■■ 96.1
LIME1-207ENST00000489212 COL4A2P08572 1712 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 TRIM49BA6NDI0 452 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 CETN3O15182 167 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 GALR2O43603 387 aaPredicted RBP22.57■■□□□ 1.2
LIME1-207ENST00000489212 LRRN2O75325 713 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 PRAMEF12O95522 483 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 CD44P16070 742 aaKnown RBP22.57■■□□□ 1.2
LIME1-207ENST00000489212 BMP6P22004 513 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 GDI1P31150 447 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 NUBP1P53384 320 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 NHLH1Q02575 133 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 VSTM1Q6UX27 236 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 B3GALNT2Q8NCR0 500 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 DEPDC1BQ8WUY9 529 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 TRMT2BQ96GJ1 504 aaKnown RBP22.57■■□□□ 1.2
LIME1-207ENST00000489212 MYRFLQ96LU7 910 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 DDX23Q9BUQ8 820 aaKnown RBP22.57■■□□□ 1.2
LIME1-207ENST00000489212 BRD9Q9H8M2 597 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 APOBEC3GQ9HC16 384 aaKnown RBP22.57■■□□□ 1.2
LIME1-207ENST00000489212 TMEM30AQ9NV96 361 aa22.57■■□□□ 1.2
LIME1-207ENST00000489212 PIEZO1Q92508 2521 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 SHISA7A6NL88 538 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 RFX1P22670 979 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 WEE1P30291 646 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 ASPAP45381 313 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 CACNA2D1P54289 1103 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 PRKCQQ04759 706 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 TAF4BQ92750 862 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 E2F7Q96AV8 911 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 B3GNT5Q9BYG0 378 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 ZNF518BQ9C0D4 1074 aa22.56■■□□□ 1.2
LIME1-207ENST00000489212 SMG9Q9H0W8 520 aaKnown RBP22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms