RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FMO5P49326 533 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 MAPRE1Q15691 268 aaKnown RBP15.74■□□□□ 0.11
USP4-212ENST00000486549 PRSS36Q5K4E3 855 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 CCDC183Q5T5S1 534 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 ITIH5Q86UX2 942 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 NPAS3Q8IXF0 933 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 MYCBPAPQ8TBZ2 947 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 FGF13Q92913 245 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 PBXIP1Q96AQ6 731 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 PCED1BQ96HM7 432 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 CNOT6LQ96LI5 555 aaKnown RBP15.74■□□□□ 0.11
USP4-212ENST00000486549 BCO2Q9BYV7 579 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 ABCB6Q9NP58 842 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 CDH7Q9ULB5 785 aa15.74■□□□□ 0.11
USP4-212ENST00000486549 NRG2O14511 850 aaPredicted RBP15.73■□□□□ 0.11
USP4-212ENST00000486549 ZNF197O14709 1029 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 BDNFP23560 247 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 NDST1P52848 882 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 RPL10AP62906 217 aaKnown RBP15.73■□□□□ 0.11
USP4-212ENST00000486549 LRMPQ12912 555 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 DDR2Q16832 855 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 CFAP221Q4G0U5 840 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 RBM43Q6ZSC3 357 aaKnown RBP15.73■□□□□ 0.11
USP4-212ENST00000486549 HFE2Q6ZVN8 426 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 DNAJB7Q7Z6W7 309 aaPredicted RBP15.73■□□□□ 0.11
USP4-212ENST00000486549 ACOT1Q86TX2 421 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 TMC8Q8IU68 726 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 TRIM59Q8IWR1 403 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 B3GALNT2Q8NCR0 500 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 PSMG2Q969U7 264 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 MCRS1Q96EZ8 462 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 FUBP3Q96I24 572 aaKnown RBP eCLIP15.73■□□□□ 0.11
USP4-212ENST00000486549 ZNF334Q9HCZ1 680 aaPredicted RBP15.73■□□□□ 0.11
USP4-212ENST00000486549 AVENQ9NQS1 362 aaPredicted RBP15.73■□□□□ 0.11
USP4-212ENST00000486549 EPS15L1Q9UBC2 864 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 ASB3Q9Y575 518 aa15.73■□□□□ 0.11
USP4-212ENST00000486549 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.73■□□□□ 0.11
USP4-212ENST00000486549 A0A1W2PRU2 124 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 GRIK1P39086 918 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 MARSP56192 900 aaKnown RBP15.72■□□□□ 0.11
USP4-212ENST00000486549 SASS6Q6UVJ0 657 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 LEMD2Q8NC56 503 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 RSAD2Q8WXG1 361 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 TATDN2Q93075 761 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 TNIP3Q96KP6 325 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 ARID3AQ99856 593 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 MED10Q9BTT4 135 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 ZNF518BQ9C0D4 1074 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 KCNK12Q9HB15 430 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 CYP3A43Q9HB55 503 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 MAGED2Q9UNF1 606 aaPredicted RBP15.72■□□□□ 0.11
USP4-212ENST00000486549 COQ4Q9Y3A0 265 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 MYH10P35580 1976 aa15.72■□□□□ 0.11
USP4-212ENST00000486549 CLDN5O00501 218 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 AFPP02771 609 aaKnown RBP15.71■□□□□ 0.11
USP4-212ENST00000486549 ANXA13P27216 316 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 GABRR2P28476 465 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 ERCC5P28715 1186 aaPredicted RBP15.71■□□□□ 0.11
USP4-212ENST00000486549 MAGEA11P43364 429 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 EPHA5P54756 1037 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 CETN1Q12798 172 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 KCNH2Q12809 1159 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 TEAD2Q15562 447 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 HSP90AA4PQ58FG1 418 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 UNC93AQ86WB7 457 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 SHKBP1Q8TBC3 707 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 NXPE3Q969Y0 559 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 TWNKQ96RR1 684 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 LRRC3Q9BY71 257 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 B3GNT5Q9BYG0 378 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 ATXN3LQ9H3M9 355 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 SMOC2Q9H3U7 446 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 SLITRK6Q9H5Y7 841 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 FAM49BQ9NUQ9 324 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 TMEM63CQ9P1W3 806 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 IGSF9Q9P2J2 1179 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 RAPGEFL1Q9UHV5 662 aa15.71■□□□□ 0.11
USP4-212ENST00000486549 ZFP37Q9Y6Q3 630 aaPredicted RBP15.71■□□□□ 0.11
USP4-212ENST00000486549 OBSL1O75147 1896 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 SLC38A8A6NNN8 435 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 MOSPD3O75425 235 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 CCDC130P13994 396 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 TRIM21P19474 475 aaKnown RBP15.7■□□□□ 0.1
USP4-212ENST00000486549 MTIF2P46199 727 aaKnown RBP15.7■□□□□ 0.1
USP4-212ENST00000486549 NUBP1P53384 320 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 INCA1Q0VD86 236 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 HTR4Q13639 388 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 STX1AQ16623 288 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 ZNF394Q53GI3 561 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 CAVIN1Q6NZI2 390 aaKnown RBP15.7■□□□□ 0.1
USP4-212ENST00000486549 POTEHQ6S545 545 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 PARM1Q6UWI2 310 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 VSTM1Q6UX27 236 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 FAM35AQ86V20 835 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 IRF2BP1Q8IU81 584 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 FBXL6Q8N531 539 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 FGF14Q92915 247 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 GCNAQ96QF7 691 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 NT5C1AQ9BXI3 368 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 ELOVL4Q9GZR5 314 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms