RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ZBTB1Q9Y2K1 713 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 FRYLO94915 3013 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 KTN1Q86UP2 1357 aaKnown RBP5.06□□□□□ -1.6
VPS13A-210ENST00000471439 PSMD14O00487 310 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 WNT10BO00744 389 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 TCERG1O14776 1098 aaKnown RBP5.06□□□□□ -1.6
VPS13A-210ENST00000471439 ADCY6O43306 1168 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 NDUFS2O75306 463 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 PF4V1P10720 104 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 PHKG2P15735 406 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 RECQLP46063 649 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-210ENST00000471439 CNGB1Q14028 1251 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-210ENST00000471439 UBE3CQ15386 1083 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 CSRP2Q16527 193 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 MAN2A1Q16706 1144 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 TMEM240Q5SV17 173 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 ARMC9Q7Z3E5 817 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 MDGA1Q8NFP4 955 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 OR5M3Q8NGP4 307 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 TIFAQ96CG3 184 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 RAX2Q96IS3 184 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 CLMNQ96JQ2 1002 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 MNTQ99583 582 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 PRRX2Q99811 253 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 MRIQ9BWK5 157 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 VPS33BQ9H267 617 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 ZNF703Q9H7S9 590 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-210ENST00000471439 ALG13Q9NP73 1137 aaKnown RBP5.06□□□□□ -1.6
VPS13A-210ENST00000471439 MGAMO43451 1857 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 PIEZO2Q9H5I5 2752 aa5.06□□□□□ -1.6
VPS13A-210ENST00000471439 COL4A3Q01955 1670 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ADGRA2Q96PE1 1338 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 GRXCR1A8MXD5 290 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 CYR61O00622 381 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 MAFGO15525 162 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 HOXA3O43365 443 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 DCXO43602 365 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 U2AF1L5P0DN76 240 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 CYP19A1P11511 503 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 NR4A1P22736 598 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 PSMC4P43686 418 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 AMPHP49418 695 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 U2AF1Q01081 240 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 FHL2Q14192 279 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ADRM1Q16186 407 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 MBNL2Q5VZF2 373 aaKnown RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ANKS6Q68DC2 871 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 HTR3DQ70Z44 454 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ZNF627Q7L945 461 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 TAS1R1Q7RTX1 841 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 GLB1L2Q8IW92 636 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 WDR75Q8IWA0 830 aaKnown RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ADSSL1Q8N142 457 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 FBXO18Q8NFZ0 1043 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 NEU4Q8WWR8 484 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ST8SIA2Q92186 375 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 LARP4BQ92615 738 aaKnown RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ACE2Q9BYF1 805 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 GPRC5BQ9NZH0 403 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 ZBTB21Q9ULJ3 1066 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 REXO2Q9Y3B8 237 aaKnown RBP5.05□□□□□ -1.6
VPS13A-210ENST00000471439 MRFAP1Q9Y605 127 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 MAST2Q6P0Q8 1798 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 TEX15Q9BXT5 2789 aa5.05□□□□□ -1.6
VPS13A-210ENST00000471439 TENM4Q6N022 2769 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 XDHP47989 1333 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 CNOT1A5YKK6 2376 aaKnown RBP5.04□□□□□ -1.6
VPS13A-210ENST00000471439 ERVV-2B6SEH9 535 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 NRP2O60462 931 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 TLR2O60603 784 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 GNAT2P19087 354 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 XPAP23025 273 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-210ENST00000471439 ZFP36P26651 326 aaKnown RBP5.04□□□□□ -1.6
VPS13A-210ENST00000471439 HOXD10P28358 340 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 NF2P35240 595 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 GPR15P49685 360 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 NRG3P56975 720 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 PRKCZQ05513 592 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 DUSP2Q05923 314 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 ABHD18Q0P651 414 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 C14orf80Q86SX3 495 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 GSPT2Q8IYD1 628 aaKnown RBP5.04□□□□□ -1.6
VPS13A-210ENST00000471439 CHPFQ8IZ52 775 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 ZNF483Q8TF39 744 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-210ENST00000471439 CLIP3Q96DZ5 547 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 IL17RAQ96F46 866 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 CPPED1Q9BRF8 314 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-210ENST00000471439 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 EPC1Q9H2F5 836 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 ZNF768Q9H5H4 540 aaKnown RBP5.04□□□□□ -1.6
VPS13A-210ENST00000471439 TCF7L1Q9HCS4 588 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 PARPBPQ9NWS1 579 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 SCOCQ9UIL1 159 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 CFAP46Q8IYW2 2715 aa5.04□□□□□ -1.6
VPS13A-210ENST00000471439 DOCK3Q8IZD9 2030 aa5.03□□□□□ -1.6
VPS13A-210ENST00000471439 E2F8A0AVK6 867 aa5.03□□□□□ -1.6
VPS13A-210ENST00000471439 NRP1O14786 923 aa5.03□□□□□ -1.6
VPS13A-210ENST00000471439 ITGA10O75578 1167 aa5.03□□□□□ -1.6
VPS13A-210ENST00000471439 IPO13O94829 963 aaKnown RBP5.03□□□□□ -1.6
VPS13A-210ENST00000471439 IL33O95760 270 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms