RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 SMTNL1A8MU46 457 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 KIAA0355O15063 1070 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 CETN3O15182 167 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 DDX3YO15523 660 aaKnown RBP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 EXOC3O60645 756 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 CXCL10P02778 98 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 ABCD1P33897 745 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 OSTNP61366 133 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 SNRPFP62306 86 aaKnown RBP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 DLG4P78352 724 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 MYBPC2Q14324 1141 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 NOLC1Q14978 699 aaKnown RBP eCLIP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 PCBP1Q15365 356 aaKnown RBP eCLIP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 ZNF568Q3ZCX4 644 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 GLIPR1L2Q4G1C9 344 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 PLEKHG4Q58EX7 1191 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 TCP11X2Q5H9J9 407 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 C1orf220Q5T0J3 134 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 NOTUMQ6P988 496 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 SLC27A1Q6PCB7 646 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 FILIP1Q7Z7B0 1213 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 THNSL1Q8IYQ7 743 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 XXYLT1Q8NBI6 393 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 SMG8Q8ND04 991 aaKnown RBP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 GOLGA5Q8TBA6 731 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 CNOT6LQ96LI5 555 aaKnown RBP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 TSG101Q99816 390 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 FAM213AQ9BRX8 229 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 TCHPQ9BT92 498 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 MSTO1Q9BUK6 570 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 NXF3Q9H4D5 531 aaKnown RBP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 THAP9Q9H5L6 903 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 INTS13Q9NVM9 706 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 CPSF3Q9UKF6 684 aaKnown RBP5.13□□□□□ -1.59
SF3B1-208ENST00000470268 RAXQ9Y2V3 346 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 SQORQ9Y6N5 450 aa5.13□□□□□ -1.59
SF3B1-208ENST00000470268 PTPRJQ12913 1337 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 MEGF11A6BM72 1044 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 LRRC10BA6NIK2 292 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 KIAA1324LA8MWY0 1029 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 KCNJ18B7U540 433 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 GFRA2O00451 464 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 OGTO15294 1046 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 EXTL3O43909 919 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 NPTXRO95502 500 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 DLGAP3O95886 979 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 TIMP1P01033 207 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 IGLV1-40P01703 118 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 CSF2RAP15509 400 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 ATF7P17544 494 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 SYN1P17600 705 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 RPL13P26373 211 aaKnown RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 AXLP30530 894 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 KCNJ12Q14500 433 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 KRT31Q15323 416 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 SNRNP35Q16560 246 aaKnown RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 TPD52L1Q16890 204 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 DUOXA2Q1HG44 320 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 MIIPQ5JXC2 388 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 EXOSC6Q5RKV6 272 aaKnown RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 TWF2Q6IBS0 349 aaKnown RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 SLFN12LQ6IEE8 588 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 DEFB128Q7Z7B8 93 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 CREBRFQ8IUR6 639 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 TRIM59Q8IWR1 403 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 C7orf61Q8IZ16 206 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 GPD1LQ8N335 351 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 USP38Q8NB14 1042 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 NOC3LQ8WTT2 800 aaKnown RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 SLC35C1Q96A29 364 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 TRIM44Q96DX7 344 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 NAP1L5Q96NT1 182 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 ADAM2Q99965 735 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 TOPORSQ9NS56 1045 aaPredicted RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 SNTG2Q9NY99 539 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 CGNQ9P2M7 1197 aaKnown RBP5.12□□□□□ -1.59
SF3B1-208ENST00000470268 IPPQ9Y573 584 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 KAT6AQ92794 2004 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 MYH11P35749 1972 aa5.12□□□□□ -1.59
SF3B1-208ENST00000470268 LAMA2P24043 3122 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 A0A0U1RQF3 1178 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 C9IYK1 514 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 GOLGA6L19H0YKK7 550 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 N4BP3O15049 544 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 SLC16A3O15427 465 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 TEX33O43247 280 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LRRN2O75325 713 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ATE1O95260 518 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 TRIM49P0CI25 452 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 TRIM49CP0CI26 452 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 STAG3L1P0CL83 205 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CXCL8P10145 99 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ACRP10323 421 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 MCF2P10911 925 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 RAG1P15918 1043 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 AKAP5P24588 427 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 GTF2F1P35269 517 aaKnown RBP eCLIP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 PSMC2P35998 433 aaKnown RBP5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms