RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 DDX42Q86XP3 938 aaKnown RBP eCLIP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CPNE8Q86YQ8 564 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ARFGAP2Q8N6H7 521 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 C7orf31Q8N865 590 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TTC13Q8NBP0 860 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CMASQ8NFW8 434 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 SPATA18Q8TC71 538 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 FBXO25Q8TCJ0 367 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 IPO4Q8TEX9 1081 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 DNAJB3Q8WWF6 145 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 NKD2Q969F2 451 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ATP6V1G3Q96LB4 118 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF560Q96MR9 790 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ZMAT2Q96NC0 199 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 MCEEQ96PE7 176 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 SLITRK1Q96PX8 696 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TWNKQ96RR1 684 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CPXM1Q96SM3 734 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 OSMRQ99650 979 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 HINFPQ9BQA5 517 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TRIM51Q9BSJ1 452 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 SLC4A5Q9BY07 1137 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TRIM6Q9C030 488 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 PHACTR1Q9C0D0 580 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 SPC25Q9HBM1 224 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TMBIM4Q9HC24 238 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 NMRK2Q9NPI5 230 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ASNSD1Q9NWL6 643 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 SNTG2Q9NY99 539 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CYTH4Q9UIA0 394 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 PDCD11Q14690 1871 aaKnown RBP8.02□□□□□ -1.12
COL6A3-208ENST00000468792 hCG_1818297A0A087WSY0 165 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SMIM28A0A1B0GU29 152 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 C3orf70A6NLC5 250 aaPredicted RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 F8VP50 259 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SMAPO00193 183 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 TP73O15350 636 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SEPT4O43236 478 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 LRCH4O75427 683 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 TCEA3O75764 348 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 RECQL4O94761 1208 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 ENDOD1O94919 500 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 ITGAVP06756 1048 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 MYL3P08590 195 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PSMA2P25787 234 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CST5P28325 142 aaPredicted RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CDKN2BP42772 138 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 RAP1GAPP47736 663 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PMS2P54278 862 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PLTPP55058 493 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 OGDHQ02218 1023 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CRHR2Q13324 411 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 HIC1Q14526 733 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PPP1R7Q15435 360 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CCL14Q16627 93 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SV2CQ496J9 727 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 C2CD6Q53TS8 623 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 FBXO47Q5MNV8 452 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 LLGL2Q6P1M3 1020 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 KDM7AQ6ZMT4 941 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SPOCD1Q6ZMY3 1216 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 ADAT2Q7Z6V5 191 aaKnown RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 HOOK3Q86VS8 718 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 HACE1Q8IYU2 909 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 TOP6BLQ8N6T0 577 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 KCNV2Q8TDN2 545 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SLC35F5Q8WV83 523 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PGM2Q96G03 612 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SNF8Q96H20 258 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 HSFY1Q96LI6 401 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 HEXIM2Q96MH2 286 aaKnown RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PHF12Q96QT6 1004 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 TBCBQ99426 244 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CNPY3Q9BT09 278 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CFHR5Q9BXR6 569 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 EIF2AQ9BY44 585 aaKnown RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 ROPN1BQ9BZX4 212 aaPredicted RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 FAM49AQ9H0Q0 323 aaPredicted RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 ROPN1Q9HAT0 212 aaPredicted RBP8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PRDM16Q9HAZ2 1276 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CDHR5Q9HBB8 845 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SLC38A7Q9NVC3 462 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 GTF2IRD1Q9UHL9 959 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 TSPAN16Q9UKR8 245 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 PLAAQ9Y263 795 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SNX24Q9Y343 169 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 SQORQ9Y6N5 450 aa8.02□□□□□ -1.13
COL6A3-208ENST00000468792 CASP8AP2Q9UKL3 1982 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 C2CD4BA6NLJ0 364 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 KPNA7A9QM74 516 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 M0QYV0 167 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 M0QZ92 97 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 LIASO43766 372 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 ZNF623O75123 536 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 CAND2O75155 1236 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 RNF8O76064 485 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 KRT14P02533 472 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 PFKMP08237 780 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 DESP17661 470 aa8.01□□□□□ -1.13
COL6A3-208ENST00000468792 WARSP23381 471 aaKnown RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms