RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 TRIM49CP0CI26 452 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 CEBPBP17676 345 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 ATF6P18850 670 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 CCR2P41597 374 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 PIK3CAP42336 1068 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 MAGEA11P43364 429 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 KRT39Q6A163 491 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 MYCBPAPQ8TBZ2 947 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 NELFBQ8WX92 580 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 RSAD2Q8WXG1 361 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 TCEAL4Q96EI5 215 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 ARMCX3Q9UH62 379 aaPredicted RBP13.92□□□□□ -0.18
COL28A1-206ENST00000465339 DUSP12Q9UNI6 340 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 TRIOO75962 3097 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 DENND4CQ5VZ89 1909 aa13.92□□□□□ -0.18
COL28A1-206ENST00000465339 A8MXQ7 604 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 HCRTO43612 131 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CSH1P0DML2 217 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CSH2P0DML3 217 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 PTPN1P18031 435 aaKnown RBP13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CYP2F1P24903 491 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CDR1P51861 262 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CDH8P55286 799 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 FOXK1P85037 733 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 KLHL10Q6JEL2 608 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 TTI2Q6NXR4 508 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 PARM1Q6UWI2 310 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 VSTM1Q6UX27 236 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 FRMD5Q7Z6J6 570 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 TMC8Q8IU68 726 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 PLPP6Q8IY26 295 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 GIPC2Q8TF65 315 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 FGF14Q92915 247 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 FAXDC2Q96IV6 333 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 TNIP3Q96KP6 325 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CEP295NLQ96MC4 621 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 DUSP9Q99956 384 aaKnown RBP13.91□□□□□ -0.18
COL28A1-206ENST00000465339 LPIN3Q9BQK8 851 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CLSTN2Q9H4D0 955 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 MMRN2Q9H8L6 949 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 CRTAC1Q9NQ79 661 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 LMBRD1Q9NUN5 540 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 NUMBLQ9Y6R0 609 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 PTPRDP23468 1912 aa13.91□□□□□ -0.18
COL28A1-206ENST00000465339 GOLGA6L22H0YM25 854 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 MOSPD3O75425 235 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 ECI2O75521 394 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 GNA14O95837 355 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 SRFP11831 508 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 GABRR2P28476 465 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 CDC25CP30307 473 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 MXI1P50539 228 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 PSMC1P62191 440 aaKnown RBP13.9□□□□□ -0.18
COL28A1-206ENST00000465339 CYP27A1Q02318 531 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 PAK1Q13153 545 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 DDR2Q16832 855 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 TCERG1LQ5VWI1 586 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 UNC93AQ86WB7 457 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 FBXL13Q8NEE6 735 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 SHKBP1Q8TBC3 707 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 TAS1R2Q8TE23 839 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 MYLPFQ96A32 169 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 PBXIP1Q96AQ6 731 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 ASIC4Q96FT7 647 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 PCED1BQ96HM7 432 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 BCO2Q9BYV7 579 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 DNAI2Q9GZS0 605 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 SMYD3Q9H7B4 428 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 CYP3A43Q9HB55 503 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 RAB20Q9NX57 234 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 WNT16Q9UBV4 365 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 ZMYM5Q9UJ78 669 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 GREB1Q4ZG55 1949 aa13.9□□□□□ -0.18
COL28A1-206ENST00000465339 A0A1W2PRU2 124 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SOBPA7XYQ1 873 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 FGFR1OPO95684 399 aaKnown RBP13.89□□□□□ -0.19
COL28A1-206ENST00000465339 GJA1P17302 382 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 TRIM21P19474 475 aaKnown RBP13.89□□□□□ -0.19
COL28A1-206ENST00000465339 ASPAP45381 313 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 TEAD2Q15562 447 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 CCDC40Q4G0X9 1142 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 ARHGAP15Q53QZ3 475 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 DCAF17Q5H9S7 520 aaPredicted RBP13.89□□□□□ -0.19
COL28A1-206ENST00000465339 MDH1BQ5I0G3 518 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 FAM78AQ5JUQ0 283 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SPOPLQ6IQ16 392 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SCARA5Q6ZMJ2 495 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 HFE2Q6ZVN8 426 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 GAREM2Q75VX8 874 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SCN4BQ8IWT1 228 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 CRYBG2Q8N1P7 616 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 MLKLQ8NB16 471 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 B3GALNT2Q8NCR0 500 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 GPR152Q8TDT2 470 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SMARCD2Q92925 531 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SLC35C1Q96A29 364 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 E2F7Q96AV8 911 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 ELSPBP1Q96BH3 223 aa13.89□□□□□ -0.19
COL28A1-206ENST00000465339 TRMT2BQ96GJ1 504 aaKnown RBP13.89□□□□□ -0.19
COL28A1-206ENST00000465339 SPATA17Q96L03 361 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms