RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PWWP2AQ96N64 755 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 TTC25Q96NG3 672 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 TWNKQ96RR1 684 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 KATNBL1Q9H079 304 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 PCDH9Q9HC56 1237 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 DNAJC17Q9NVM6 304 aaKnown RBP15.86■□□□□ 0.13
LDLR-202ENST00000455727 ITGA11Q9UKX5 1188 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 KIAA1257Q9ULG3 409 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 KAT6AQ92794 2004 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 INCA1Q0VD86 236 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 TMEM132DQ14C87 1099 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 PIGWQ7Z7B1 504 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 MICALL1Q8N3F8 863 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 RIBC1Q8N443 379 aaPredicted RBP15.86■□□□□ 0.13
LDLR-202ENST00000455727 GLIS1Q8NBF1 620 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 AFG1LQ8WV93 481 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 HPDLQ96IR7 371 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 CFAP57Q96MR6 1250 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 ACTL7BQ9Y614 415 aa15.86■□□□□ 0.13
LDLR-202ENST00000455727 A0A1B0GUA9 196 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 MICAL2O94851 1124 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 ERBB2P04626 1255 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 KDELR1P24390 212 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 GPD2P43304 727 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 GJC2Q5T442 439 aaPredicted RBP15.85■□□□□ 0.13
LDLR-202ENST00000455727 BBS12Q6ZW61 710 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 KIAA0319LQ8IZA0 1049 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 CPB2Q96IY4 423 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 PRMT1Q99873 361 aaKnown RBP15.85■□□□□ 0.13
LDLR-202ENST00000455727 SYNCQ9H7C4 482 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 TJP2Q9UDY2 1190 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 BARX2Q9UMQ3 279 aaPredicted RBP15.85■□□□□ 0.13
LDLR-202ENST00000455727 SHOC2Q9UQ13 582 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 H3BRB1 525 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 CSDE1O75534 798 aaKnown RBP15.85■□□□□ 0.13
LDLR-202ENST00000455727 VTNP04004 478 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 RBP5P82980 135 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 GPS1Q13098 491 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 CCDC38Q502W7 563 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 PCGF5Q86SE9 256 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 PRUNE1Q86TP1 453 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 CMASQ8NFW8 434 aaPredicted RBP15.85■□□□□ 0.13
LDLR-202ENST00000455727 ACAP3Q96P50 834 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 TUT1Q9H6E5 874 aaKnown RBP15.85■□□□□ 0.13
LDLR-202ENST00000455727 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.85■□□□□ 0.13
LDLR-202ENST00000455727 EURLQ9NYK6 297 aa15.85■□□□□ 0.13
LDLR-202ENST00000455727 TSPAN1O60635 241 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 HOXD8P13378 290 aaPredicted RBP15.84■□□□□ 0.13
LDLR-202ENST00000455727 IL1R2P27930 398 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 TTC31Q49AM3 519 aaPredicted RBP15.84■□□□□ 0.13
LDLR-202ENST00000455727 RNF187Q5TA31 235 aaPredicted RBP15.84■□□□□ 0.13
LDLR-202ENST00000455727 RNASEH2BQ5TBB1 312 aaKnown RBP15.84■□□□□ 0.13
LDLR-202ENST00000455727 VSTM1Q6UX27 236 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 CCDC121Q6ZUS5 278 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 ZNF410Q86VK4 478 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 ACSF2Q96CM8 615 aaPredicted RBP15.84■□□□□ 0.13
LDLR-202ENST00000455727 C9orf72Q96LT7 481 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 PHACTR1Q9C0D0 580 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 MIS12Q9H081 205 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 METTL5Q9NRN9 209 aaKnown RBP15.84■□□□□ 0.13
LDLR-202ENST00000455727 HMGXB4Q9UGU5 601 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 AGAP1Q9UPQ3 857 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 TMEM120BA0PK00 339 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 ZSCAN5DPP0CG00 497 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 PCK1P35558 622 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 MYO1EQ12965 1108 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 NLRP7Q8WX94 980 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 ADPGKQ9BRR6 497 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 ZWILCHQ9H900 591 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 DPP3Q9NY33 737 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 MORF4L1Q9UBU8 362 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 NAALADL1Q9UQQ1 740 aa15.84■□□□□ 0.13
LDLR-202ENST00000455727 SGK1O00141 431 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 ALOX15BO15296 676 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 RNF8O76064 485 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 ITGBL1O95965 494 aaPredicted RBP15.83■□□□□ 0.12
LDLR-202ENST00000455727 ZNF286BP0CG31 522 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 PECAM1P16284 738 aaPredicted RBP15.83■□□□□ 0.12
LDLR-202ENST00000455727 ADCYAP1R1P41586 468 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 GCLCP48506 637 aaPredicted RBP15.83■□□□□ 0.12
LDLR-202ENST00000455727 PLCB3Q01970 1234 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 ITIH4Q14624 930 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 LCLAT1Q6UWP7 414 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 TDRPQ86YL5 185 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 LRRC34Q8IZ02 419 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 CCDC197Q8NCU1 140 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 HEXIM2Q96MH2 286 aaKnown RBP15.83■□□□□ 0.12
LDLR-202ENST00000455727 TMEM121Q9BTD3 319 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 ACTR5Q9H9F9 607 aaPredicted RBP15.83■□□□□ 0.12
LDLR-202ENST00000455727 SAYSD1Q9NPB0 183 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 ASNSD1Q9NWL6 643 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 CTNNAL1Q9UBT7 734 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 SCN4AP35499 1836 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 M0QYV0 167 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 PDHXO00330 501 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 CST8O60676 142 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 SNAI1O95863 264 aaPredicted RBP15.83■□□□□ 0.12
LDLR-202ENST00000455727 CETPP11597 493 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 ETS1P14921 441 aa15.83■□□□□ 0.12
LDLR-202ENST00000455727 GRM5P41594 1212 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms