RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 RAD23BP54727 409 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 DYNLT1P63172 113 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 TMEM62Q0P6H9 643 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 AUHQ13825 339 aaKnown RBP12.72□□□□□ -0.37
COL27A1-202ENST00000451716 AMHR2Q16671 573 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 KIAA0319LQ8IZA0 1049 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 GPRC5AQ8NFJ5 357 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 PGM2Q96G03 612 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 C9orf72Q96LT7 481 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 CPXM1Q96SM3 734 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 CXCL16Q9H2A7 254 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 PDZD7Q9H5P4 517 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 ZNF148Q9UQR1 794 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 CREB1P16220 341 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 EIF4BP23588 611 aaKnown RBP12.72□□□□□ -0.37
COL27A1-202ENST00000451716 PHKA2P46019 1235 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 CLNS1AP54105 237 aaKnown RBP12.72□□□□□ -0.37
COL27A1-202ENST00000451716 P3H1Q32P28 736 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 PPP1R15BQ5SWA1 713 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 C6orf118Q5T5N4 469 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 IZUMO3Q5VZ72 239 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 NLRP7Q8WX94 980 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 ELOVL4Q9GZR5 314 aa12.72□□□□□ -0.37
COL27A1-202ENST00000451716 A0A1B0GUA9 196 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PDHXO00330 501 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PSMA2P25787 234 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 TPP2P29144 1249 aaPredicted RBP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 POLR2BP30876 1174 aaKnown RBP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 MAN1A1P33908 653 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PSMC1P62191 440 aaKnown RBP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PLCB3Q01970 1234 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 SLC10A6Q3KNW5 377 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 SPOCD1Q6ZMY3 1216 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 USP50Q70EL3 339 aaPredicted RBP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 RCOR2Q8IZ40 523 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 KIRREL3Q8IZU9 778 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 ARFGAP1Q8N6T3 406 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 TRAIPQ9BWF2 469 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 SYNCQ9H7C4 482 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 CD248Q9HCU0 757 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PRMT7Q9NVM4 692 aaPredicted RBP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 ANK1P16157 1881 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 LIASO43766 372 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 KRT3P12035 628 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 IL1R2P27930 398 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 IFNAR2P48551 515 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 LAMC2Q13753 1193 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 TRMT10CQ7L0Y3 403 aaKnown RBP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 TAB3Q8N5C8 712 aaPredicted RBP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 SLC4A11Q8NBS3 891 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PHC3Q8NDX5 983 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 UBA3Q8TBC4 463 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 UPF1Q92900 1129 aaKnown RBP eCLIP12.71□□□□□ -0.37
COL27A1-202ENST00000451716 SUN2Q9UH99 717 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 TBK1Q9UHD2 729 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PCSK1NQ9UHG2 260 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 PCDHGC3Q9UN70 934 aa12.71□□□□□ -0.37
COL27A1-202ENST00000451716 ENO4A6NNW6 628 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 ASAP2O43150 1006 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 TTC4O95801 387 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 GH1P01241 217 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 ERBB2P04626 1255 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 ADCY1Q08828 1119 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 IFT88Q13099 833 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 ZNF792Q3KQV3 632 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 MAP1SQ66K74 1059 aaPredicted RBP12.71□□□□□ -0.38
COL27A1-202ENST00000451716 CYP4F22Q6NT55 531 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 RBM41Q96IZ5 413 aaKnown RBP12.71□□□□□ -0.38
COL27A1-202ENST00000451716 XPO6Q96QU8 1125 aaKnown RBP12.71□□□□□ -0.38
COL27A1-202ENST00000451716 C16orf70Q9BSU1 422 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 TMEM121Q9BTD3 319 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 METTL5Q9NRN9 209 aaKnown RBP12.71□□□□□ -0.38
COL27A1-202ENST00000451716 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.71□□□□□ -0.38
COL27A1-202ENST00000451716 AGAP1Q9UPQ3 857 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 CLEC11AQ9Y240 323 aa12.71□□□□□ -0.38
COL27A1-202ENST00000451716 BTBD19C9JJ37 291 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 ZSCAN9O15535 394 aaPredicted RBP12.7□□□□□ -0.38
COL27A1-202ENST00000451716 IFNB1P01574 187 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 CD48P09326 243 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 KLRC2P26717 231 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 CDH5P33151 784 aaPredicted RBP12.7□□□□□ -0.38
COL27A1-202ENST00000451716 CETN2P41208 172 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 RANBP1P43487 201 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 MMP13P45452 471 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 TAF5Q15542 800 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 ZNF484Q5JVG2 852 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 LDLRAD1Q5T700 205 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 SYDE1Q6ZW31 735 aaPredicted RBP12.7□□□□□ -0.38
COL27A1-202ENST00000451716 ILDR2Q71H61 639 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 B4GALNT4Q76KP1 1039 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 CCDC89Q8N998 374 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 SPDYE1Q8NFV5 336 aaPredicted RBP12.7□□□□□ -0.38
COL27A1-202ENST00000451716 CXorf38Q8TB03 319 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 MGARPQ8TDB4 240 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 BCO2Q9BYV7 579 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 ZNF518BQ9C0D4 1074 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 MLXIPLQ9NP71 852 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 HOMER3Q9NSC5 361 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 NINJ2Q9NZG7 142 aa12.7□□□□□ -0.38
COL27A1-202ENST00000451716 DDX20Q9UHI6 824 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms