RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CCL26Q9Y258 94 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 SNX9Q9Y5X1 595 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 CLIC4Q9Y696 253 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 CACNA1AO00555 2505 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 MYMKA6NI61 221 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 GDF9O60383 454 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 PPP1R37O75864 691 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 NOL4O94818 638 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 CKMP06732 381 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 HDCP19113 662 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 KCNA4P22459 653 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 IFNAR2P48551 515 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 PXNP49023 591 aaPredicted RBP14.26□□□□□ -0.13
HMGB3-204ENST00000448905 LIMK1P53667 647 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 ELF2Q15723 593 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 DUOXA2Q1HG44 320 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 CFAP221Q4G0U5 840 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 WDR44Q5JSH3 913 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 TRIM68Q6AZZ1 485 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 FSTL4Q6MZW2 842 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 SCN4BQ8IWT1 228 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 CCDC65Q8IXS2 484 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 C1orf127Q8N9H9 656 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 OSCP1Q8WVF1 389 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 ACDQ96AP0 544 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 SAAL1Q96ER3 474 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 ZC3H10Q96K80 434 aaKnown RBP14.26□□□□□ -0.13
HMGB3-204ENST00000448905 CEP295NLQ96MC4 621 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 ECT2Q9H8V3 914 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 KIAA1586Q9HCI6 787 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 HPS4Q9NQG7 708 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 PANK4Q9NVE7 773 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 C2orf42Q9NWW7 574 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 MAGEC2Q9UBF1 373 aaPredicted RBP14.26□□□□□ -0.13
HMGB3-204ENST00000448905 L1RE1Q9UN81 338 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 GPR179Q6PRD1 2367 aa14.26□□□□□ -0.13
HMGB3-204ENST00000448905 TICRRQ7Z2Z1 1910 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 ZNF233A6NK53 670 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 RNF40O75150 1001 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 CD2BP2O95400 341 aaKnown RBP14.25□□□□□ -0.13
HMGB3-204ENST00000448905 EGFP01133 1207 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 TNNC2P02585 160 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 ARSAP15289 507 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 ACAT1P24752 427 aaKnown RBP14.25□□□□□ -0.13
HMGB3-204ENST00000448905 HOXC13P31276 330 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 GJA4P35212 333 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 STAT6P42226 847 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 RAP1GAPP47736 663 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 GPR15P49685 360 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 KCNA1Q09470 495 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 PSMD2Q13200 908 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 KCNB1Q14721 858 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 MTF1Q14872 753 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 USP49Q70CQ1 688 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 SYT13Q7L8C5 426 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 ADGRF2Q8IZF7 708 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 CD101Q93033 1021 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 DNAJC19Q96DA6 116 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 CYP2S1Q96SQ9 504 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 PANK2Q9BZ23 570 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 VPS45Q9NRW7 570 aa14.25□□□□□ -0.13
HMGB3-204ENST00000448905 GOLGA8IPA6NC78 632 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 OTOL1A6NHN0 477 aaPredicted RBP14.24□□□□□ -0.13
HMGB3-204ENST00000448905 GOLGA8JA6NMD2 632 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 GABRDO14764 452 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 EPN2O95208 641 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 PFKLP17858 780 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 ANXA13P27216 316 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 GRIK1P39086 918 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 MAGEA11P43364 429 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 PPP3CCP48454 512 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 AMPD3Q01432 767 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 CEBPZQ03701 1054 aaKnown RBP14.24□□□□□ -0.13
HMGB3-204ENST00000448905 SDHAF4Q5VUM1 108 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 VSTM1Q6UX27 236 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 KBTBD6Q86V97 674 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 C11orf74Q86VG3 221 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 GPD1LQ8N335 351 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 HPDLQ96IR7 371 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 IKZF4Q9H2S9 585 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 PCIF1Q9H4Z3 704 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 FBRSL1Q9HCM7 1045 aaKnown RBP14.24□□□□□ -0.13
HMGB3-204ENST00000448905 PDE11AQ9HCR9 933 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 TRPM5Q9NZQ8 1165 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 FBXO2Q9UK22 296 aaPredicted RBP14.24□□□□□ -0.13
HMGB3-204ENST00000448905 CDH9Q9ULB4 789 aa14.24□□□□□ -0.13
HMGB3-204ENST00000448905 NFATC1O95644 943 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 APBB3O95704 486 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 CENPBP07199 599 aaPredicted RBP14.23□□□□□ -0.13
HMGB3-204ENST00000448905 FAM163BP0C2L3 166 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 SF3A2Q15428 464 aaKnown RBP14.23□□□□□ -0.13
HMGB3-204ENST00000448905 SOWAHAQ2M3V2 549 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 USP39Q53GS9 565 aaKnown RBP14.23□□□□□ -0.13
HMGB3-204ENST00000448905 PKN3Q6P5Z2 889 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 FAM171BQ6P995 826 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 ARL14EPQ8N8R7 260 aaPredicted RBP14.23□□□□□ -0.13
HMGB3-204ENST00000448905 RPLP0P6Q8NHW5 317 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 SH3RF2Q8TEC5 729 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 CHFRQ96EP1 664 aa14.23□□□□□ -0.13
HMGB3-204ENST00000448905 SPATA17Q96L03 361 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms