RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 C17orf75Q9HAS0 396 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 FBXO6Q9NRD1 293 aaPredicted RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 CHKBQ9Y259 395 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 MED7O43513 233 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 OPHN1O60890 802 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 TNFSF9P41273 254 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 ELK3P41970 407 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 C1QBPQ07021 282 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 CLEC4DQ8WXI8 215 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 THTPAQ9BU02 230 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 NIF3L1Q9GZT8 377 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 MIS12Q9H081 205 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 RPF1Q9H9Y2 349 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 RNPEPL1Q9HAU8 725 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 APOBEC3GQ9HC16 384 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 STAT5BP51692 787 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 HIRAP54198 1017 aaPredicted RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 BCAR1P56945 870 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 RIPK1Q13546 671 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 MROH9Q5TGP6 573 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 PPP1R2P3Q6NXS1 205 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 SLC39A4Q6P5W5 647 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 FAM13CQ8NE31 585 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 DDX1Q92499 740 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 NSL1Q96IY1 281 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 TMEM120AQ9BXJ8 343 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 MRPL4Q9BYD3 311 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 CYP4F11Q9HBI6 524 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 PCMTD2Q9NV79 361 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 STRIP2Q9ULQ0 834 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 STARD13Q9Y3M8 1113 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 DDX60LQ5H9U9 1706 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 LAMB1P07942 1786 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 CST3P01034 146 aaPredicted RBP12.43□□□□□ -0.42
MSH6-204ENST00000445503 CALB2P22676 271 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 SERPINB6P35237 376 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 SPDYE2Q495Y8 402 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 C1orf146Q5VVC0 180 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 FAM160B1Q5W0V3 765 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 MON1BQ7L1V2 547 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 CRLF3Q8IUI8 442 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 RFWD2Q8NHY2 731 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 MAGEC3Q8TD91 643 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 CCDC134Q9H6E4 229 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.43□□□□□ -0.42
MSH6-204ENST00000445503 ZC3H7BQ9UGR2 993 aaKnown RBP12.43□□□□□ -0.42
MSH6-204ENST00000445503 TELO2Q9Y4R8 837 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 EDF1O60869 148 aaKnown RBP12.43□□□□□ -0.42
MSH6-204ENST00000445503 PRKCBP05771 671 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 PDGFRAP16234 1089 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 NCF2P19878 526 aaPredicted RBP12.43□□□□□ -0.42
MSH6-204ENST00000445503 GLRA2P23416 452 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 SLC8A3P57103 927 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 KLC1Q07866 573 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 FAAP100Q0VG06 881 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 PDK4Q16654 411 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 ALLCQ8N6M5 410 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 AGR3Q8TD06 166 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 STK32AQ8WU08 396 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 DEPDC1BQ8WUY9 529 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 PRPF31Q8WWY3 499 aaKnown RBP12.43□□□□□ -0.42
MSH6-204ENST00000445503 ACAD9Q9H845 621 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 SLC38A10Q9HBR0 1119 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 PCDH9Q9HC56 1237 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 POLIQ9UNA4 740 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 SRCAPQ6ZRS2 3230 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 PTPN4P29074 926 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 SGSM1Q2NKQ1 1148 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 ANKRD22Q5VYY1 191 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 STYK1Q6J9G0 422 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 NPNTQ6UXI9 565 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 RTKN2Q8IZC4 609 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 CGRRF1Q99675 332 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 ARHGEF3Q9NR81 526 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 NKX1-2Q9UD57 310 aaPredicted RBP12.43□□□□□ -0.42
MSH6-204ENST00000445503 PHLPP1O60346 1717 aa12.43□□□□□ -0.42
MSH6-204ENST00000445503 COL22A1Q8NFW1 1626 aaPredicted RBP12.42□□□□□ -0.42
MSH6-204ENST00000445503 OATP04181 439 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 UBTFL6P0CB48 400 aaPredicted RBP12.42□□□□□ -0.42
MSH6-204ENST00000445503 DCAF15Q66K64 600 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 NIPA1Q7RTP0 329 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 SDCCAG8Q86SQ7 713 aaPredicted RBP12.42□□□□□ -0.42
MSH6-204ENST00000445503 GPRASP2Q96D09 838 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 ZBTB10Q96DT7 871 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 CPSF2Q9P2I0 782 aaKnown RBP12.42□□□□□ -0.42
MSH6-204ENST00000445503 COQ4Q9Y3A0 265 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 SPECC1L-ADORA2AF8WAN1 911 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 WNT10BO00744 389 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 AVILO75366 819 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 RPL22P35268 128 aaKnown RBP12.42□□□□□ -0.42
MSH6-204ENST00000445503 DENND1BQ6P3S1 775 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 CCNYQ8ND76 341 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 ATXN7L3BQ96GX2 97 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 ASNSD1Q9NWL6 643 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 ZFATQ9P243 1243 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 SLC24A2Q9UI40 661 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 IVDP26440 423 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 PTGER2P43116 358 aa12.42□□□□□ -0.42
MSH6-204ENST00000445503 KPNB1Q14974 876 aaKnown RBP12.42□□□□□ -0.42
MSH6-204ENST00000445503 GADL1Q6ZQY3 521 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms