RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ADSSL1Q8N142 457 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF619Q8N2I2 560 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 LRRC71Q8N4P6 559 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 OR10H5Q8NGA6 315 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 OR2I1PQ8NGU4 316 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF417Q8TAU3 575 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 PIGOQ8TEQ8 1089 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 KCNN1Q92952 543 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 EID2BQ96D98 161 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF587Q96SQ5 575 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 CHST8Q9H2A9 424 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 SH2D4AQ9H788 454 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 RC3H2Q9HBD1 1191 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 USP40Q9NVE5 1235 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 MORF4L1Q9UBU8 362 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 HDAC5Q9UQL6 1122 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 RUVBL1Q9Y265 456 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 KIF3AQ9Y496 699 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ASB1Q9Y576 335 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 MYBBP1AQ9BQG0 1328 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ERCC6Q03468 1493 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 A0A0U1RQK1 487 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF320A2RRD8 509 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 BTBD11A6QL63 1104 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 EFCAB8A8MWE9 144 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 MYO1GB0I1T2 1018 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 CCNT2O60583 730 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF205O95201 554 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 METTL18O95568 372 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 LRG1P02750 347 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ALBP02768 609 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 PFKMP08237 780 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 PDHA1P08559 390 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ALAS1P13196 640 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 TLX1P31314 330 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 ACSL1P33121 698 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 BUD31P41223 144 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 PIK3CGP48736 1102 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 CLCN2P51788 898 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 MRPL12P52815 198 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 HTRA4P83105 476 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 YWHAHQ04917 246 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 CRYMQ14894 314 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 MYBPC3Q14896 1274 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 BAK1Q16611 211 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 RTP2Q5QGT7 225 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 KRT80Q6KB66 452 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 TRIM48Q8IWZ4 208 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 PQLC1Q8N2U9 271 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 LZTR1Q8N653 840 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 UHMK1Q8TAS1 419 aaKnown RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 SDCCAG3Q96C92 435 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 NEIL1Q96FI4 390 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 RBM15Q96T37 977 aaKnown RBP eCLIP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 MS4A7Q9GZW8 240 aaPredicted RBP2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 TNMDQ9H2S6 317 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 KCND3Q9UK17 655 aa2.52□□□□□ -2.01
CCDC88A-208ENST00000444458 SYCE3A1L190 88 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC35F4A4IF30 521 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM187AA6NFU0 413 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 H0YAE9 185 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SH2B2O14492 632 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 HGSO14964 777 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 REC8O95072 547 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PGM3O95394 542 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 FTCDO95954 541 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CLEC3BP05452 202 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CD1AP06126 327 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 WEE2P0C1S8 567 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 AMPD1P23109 780 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PSMA4P25789 261 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 KLRC1P26715 233 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MATR3P43243 847 aaKnown RBP eCLIP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SATB1Q01826 763 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CBX3Q13185 183 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CDK5R2Q13319 367 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 C2orf76Q3KRA6 126 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 DUSP28Q4G0W2 176 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TCP11X2Q5H9J9 407 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ABRAXAS1Q6UWZ7 409 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GAREM2Q75VX8 874 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GPR149Q86SP6 731 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 AGGF1Q8N302 714 aaeCLIP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 DNAJC5GQ8N7S2 189 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GRK7Q8WTQ7 553 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 WDR60Q8WVS4 1066 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 HMGB4Q8WW32 186 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 POMGNT1Q8WZA1 660 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SPSB4Q96A44 273 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RMDN1Q96DB5 314 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TRIM44Q96DX7 344 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CABS1Q96KC9 395 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MRGPRX1Q96LB2 322 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 METTL22Q9BUU2 404 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 C1orf43Q9BWL3 253 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TMPRSS13Q9BYE2 586 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 NDST4Q9H3R1 872 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms