RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 ZNF623O75123 536 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 HEXIM1O94992 359 aaKnown RBP22.3■■□□□ 1.16
PTPRF-207ENST00000436724 POMCP01189 267 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 RGS7P49802 495 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 MTFR1Q15390 333 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 CCDC142Q17RM4 750 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 GLE1Q53GS7 698 aaKnown RBP22.3■■□□□ 1.16
PTPRF-207ENST00000436724 ADGRF2Q8IZF7 708 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 EMC1Q8N766 993 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 C3orf58Q8NDZ4 430 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 ZBTB9Q96C00 473 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 DDX27Q96GQ7 796 aaKnown RBP22.3■■□□□ 1.16
PTPRF-207ENST00000436724 SLC38A7Q9NVC3 462 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 AMACRQ9UHK6 382 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 ADAM21Q9UKJ8 722 aa22.3■■□□□ 1.16
PTPRF-207ENST00000436724 KBTBD13C9JR72 458 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 ARVCFO00192 962 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 KRT3P12035 628 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 CCDC130P13994 396 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 CCNI2Q6ZMN8 369 aaPredicted RBP22.29■■□□□ 1.16
PTPRF-207ENST00000436724 LIMS2Q7Z4I7 341 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 OSTM1Q86WC4 334 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 TRAIPQ9BWF2 469 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 SNX25Q9H3E2 840 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 RSAD1Q9HA92 442 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 METTL5Q9NRN9 209 aaKnown RBP22.29■■□□□ 1.16
PTPRF-207ENST00000436724 E5RJQ4 531 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 CCDC188H7C350 402 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 CYB561D2O14569 222 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 GUCY2DQ02846 1103 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 TRADDQ15628 312 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 PKDCCQ504Y2 493 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 PMF1Q6P1K2 205 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 PIWIL1Q96J94 861 aaKnown RBP22.29■■□□□ 1.16
PTPRF-207ENST00000436724 GDAP1L1Q96MZ0 367 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 PHF24Q9UPV7 400 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 INPP5FQ9Y2H2 1132 aa22.29■■□□□ 1.16
PTPRF-207ENST00000436724 GABRB2P47870 512 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 RAB27AP51159 221 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 GPS2Q13227 327 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 ATP13A4Q4VNC1 1196 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 WSCD1Q658N2 575 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 RTN4RL1Q86UN2 441 aaPredicted RBP22.28■■□□□ 1.16
PTPRF-207ENST00000436724 NAP1L3Q99457 506 aaPredicted RBP22.28■■□□□ 1.16
PTPRF-207ENST00000436724 EPB41L5Q9HCM4 733 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 SIGLEC16A6NMB1 481 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 PODXLO00592 558 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 ATP2C2O75185 946 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 ADORA2BP29275 332 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 SLC13A5Q86YT5 568 aaPredicted RBP22.28■■□□□ 1.16
PTPRF-207ENST00000436724 DEFB118Q96PH6 123 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 KLHL11Q9NVR0 708 aa22.28■■□□□ 1.16
PTPRF-207ENST00000436724 ACAT1P24752 427 aaKnown RBP22.27■■□□□ 1.16
PTPRF-207ENST00000436724 MCM3P25205 808 aa22.27■■□□□ 1.16
PTPRF-207ENST00000436724 STILQ15468 1287 aa22.27■■□□□ 1.16
PTPRF-207ENST00000436724 RHOT1Q8IXI2 618 aa22.27■■□□□ 1.16
PTPRF-207ENST00000436724 CRYBG2Q8N1P7 616 aa22.27■■□□□ 1.16
PTPRF-207ENST00000436724 HERPUD2Q9BSE4 406 aa22.27■■□□□ 1.16
PTPRF-207ENST00000436724 TIMM13Q9Y5L4 95 aaPredicted RBP22.27■■□□□ 1.16
PTPRF-207ENST00000436724 CAND2O75155 1236 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 MAN1A1P33908 653 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 TAP1Q03518 808 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 PDE4CQ08493 712 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 ZNF268Q14587 947 aaPredicted RBP22.26■■□□□ 1.15
PTPRF-207ENST00000436724 PAN2Q504Q3 1202 aaKnown RBP22.26■■□□□ 1.15
PTPRF-207ENST00000436724 TXNRD3NBQ6F5E7 133 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 ECHDC2Q86YB7 292 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 TOP6BLQ8N6T0 577 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 PRELID2Q8N945 189 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 MCRS1Q96EZ8 462 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 SENP8Q96LD8 212 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.26■■□□□ 1.15
PTPRF-207ENST00000436724 FAM102AQ5T9C2 384 aaPredicted RBP22.26■■□□□ 1.15
PTPRF-207ENST00000436724 SLC35F5Q8WV83 523 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 EXOC4Q96A65 974 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 WDR35Q9P2L0 1181 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 HESX1Q9UBX0 185 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 SQORQ9Y6N5 450 aa22.26■■□□□ 1.15
PTPRF-207ENST00000436724 TTI1O43156 1089 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 PSTPIP1O43586 416 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 GABBR2O75899 941 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 PSMA2P25787 234 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 CARSP49589 748 aaKnown RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 GSCP56915 257 aaPredicted RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 UPP1Q16831 310 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 ARHGAP17Q68EM7 881 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 FAM183BPQ6ZVS7 135 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 ANKS1BQ7Z6G8 1248 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 SLC2A14Q8TDB8 520 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 IPO4Q8TEX9 1081 aaKnown RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 LINC01599Q8WXQ3 324 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 ACSF2Q96CM8 615 aaPredicted RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 PTPN22Q9Y2R2 807 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 GOLGA6L10A0A0M3HER8 536 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 I3L4J1 428 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 GRAP2O75791 330 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 WARSP23381 471 aaKnown RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 TKTP29401 623 aaKnown RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 PIGHQ14442 188 aaPredicted RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 SIX1Q15475 284 aaPredicted RBP22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms