RNA–Protein interactions for RNA: ENST00000433541.1

TREX1-201, Transcript of three prime repair exonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene TREX1, Length 1,105 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-201ENST00000433541 FAM49BQ9NUQ9 324 aa16.53■□□□□ 0.24
TREX1-201ENST00000433541 PRKAG3Q9UGI9 489 aa16.53■□□□□ 0.24
TREX1-201ENST00000433541 HMGXB4Q9UGU5 601 aa16.53■□□□□ 0.24
TREX1-201ENST00000433541 ZNF638Q14966 1978 aaKnown RBP16.52■□□□□ 0.24
TREX1-201ENST00000433541 PMM2O15305 246 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 VNN2O95498 520 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 HAPLN1P10915 354 aaPredicted RBP16.52■□□□□ 0.24
TREX1-201ENST00000433541 FSHRP23945 695 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 GRIK1P39086 918 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 EXOC3L4Q17RC7 722 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 FAM171BQ6P995 826 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 EHBP1Q8NDI1 1231 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 GPR152Q8TDT2 470 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 PCED1BQ96HM7 432 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 FUBP3Q96I24 572 aaKnown RBP eCLIP16.52■□□□□ 0.24
TREX1-201ENST00000433541 FAXDC2Q96IV6 333 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 NECAB3Q96P71 396 aaPredicted RBP16.52■□□□□ 0.24
TREX1-201ENST00000433541 VPS16Q9H269 839 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 WDR6Q9NNW5 1121 aaKnown RBP16.52■□□□□ 0.24
TREX1-201ENST00000433541 ABCB6Q9NP58 842 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 HSFX1Q9UBD0 423 aa16.52■□□□□ 0.24
TREX1-201ENST00000433541 MAGED2Q9UNF1 606 aaPredicted RBP16.52■□□□□ 0.24
TREX1-201ENST00000433541 MRPS23Q9Y3D9 190 aaKnown RBP16.52■□□□□ 0.24
TREX1-201ENST00000433541 CLDN5O00501 218 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 RHOP08100 348 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 ADORA2BP29275 332 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 INCA1Q0VD86 236 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 DDR2Q16832 855 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 CFAP221Q4G0U5 840 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 FKBP15Q5T1M5 1219 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 SDHAF4Q5VUM1 108 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 CDKAL1Q5VV42 579 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 RRAGAQ7L523 313 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 OTOP3Q7RTS5 596 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 ING5Q8WYH8 240 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 HEXIM2Q96MH2 286 aaKnown RBP16.51■□□□□ 0.23
TREX1-201ENST00000433541 GCNAQ96QF7 691 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 ELOVL4Q9GZR5 314 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 CEP72Q9P209 647 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 DNMT3BQ9UBC3 853 aaKnown RBP16.51■□□□□ 0.23
TREX1-201ENST00000433541 NME7Q9Y5B8 376 aa16.51■□□□□ 0.23
TREX1-201ENST00000433541 GOLGA6L19H0YKK7 550 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 ZNF197O14709 1029 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 TRIM66O15016 1216 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 CILPO75339 1184 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 KRT5P13647 590 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 CCDC130P13994 396 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 CD19P15391 556 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 ATF6P18850 670 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 GPR15P49685 360 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 MFAP3P55082 362 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 ZP2Q05996 745 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 IFRD2Q12894 506 aaPredicted RBP16.5■□□□□ 0.23
TREX1-201ENST00000433541 KRT31Q15323 416 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 TRIM65Q6PJ69 517 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 FAM35AQ86V20 835 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 ARHGEF19Q8IW93 802 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 HS6ST3Q8IZP7 471 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 STKLD1Q8NE28 680 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 PCMTD1Q96MG8 357 aaPredicted RBP16.5■□□□□ 0.23
TREX1-201ENST00000433541 PKMYT1Q99640 499 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 BPIFA3Q9BQP9 254 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 ZNF518BQ9C0D4 1074 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 SLITRK6Q9H5Y7 841 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 UBE2TQ9NPD8 197 aaPredicted RBP16.5■□□□□ 0.23
TREX1-201ENST00000433541 ASB3Q9Y575 518 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 PCDHB4Q9Y5E5 795 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 MYO16Q9Y6X6 1858 aa16.5■□□□□ 0.23
TREX1-201ENST00000433541 GREB1Q4ZG55 1949 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 DOCK8Q8NF50 2099 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 GTPBP10A4D1E9 387 aaKnown RBP16.49■□□□□ 0.23
TREX1-201ENST00000433541 AP1G2O75843 785 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 POU2F2P09086 479 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 CSH1P0DML2 217 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 CSH2P0DML3 217 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 SLC9A1P19634 815 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 USP8P40818 1118 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 MAGEA11P43364 429 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 MIIPQ5JXC2 388 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 TMEM270Q6UE05 265 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 VSTM1Q6UX27 236 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 DNAJB7Q7Z6W7 309 aaPredicted RBP16.49■□□□□ 0.23
TREX1-201ENST00000433541 C12orf29Q8N999 325 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 LEMD2Q8NC56 503 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 SLC2A14Q8TDB8 520 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 PSMG2Q969U7 264 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 SMARCD1Q96GM5 515 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 TMEM176AQ96HP8 235 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 TWNKQ96RR1 684 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 NOTCH4Q99466 2003 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 B3GNT5Q9BYG0 378 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 KRT82Q9NSB4 513 aa16.49■□□□□ 0.23
TREX1-201ENST00000433541 C2CD4DB7Z1M9 353 aa16.48■□□□□ 0.23
TREX1-201ENST00000433541 F8VP50 259 aa16.48■□□□□ 0.23
TREX1-201ENST00000433541 ARHGAP44Q17R89 818 aa16.48■□□□□ 0.23
TREX1-201ENST00000433541 GJD3Q8N144 294 aa16.48■□□□□ 0.23
TREX1-201ENST00000433541 CRYBG2Q8N1P7 616 aa16.48■□□□□ 0.23
TREX1-201ENST00000433541 PLCD3Q8N3E9 789 aa16.48■□□□□ 0.23
TREX1-201ENST00000433541 LMO3Q8TAP4 145 aa16.48■□□□□ 0.23
TREX1-201ENST00000433541 KAT5Q92993 513 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms