RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ADGRD1Q6QNK2 874 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 CATSPERGQ6ZRH7 1159 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 C4orf33Q8N1A6 199 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 WDTC1Q8N5D0 677 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 ERP27Q96DN0 273 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 TMEM121Q9BTD3 319 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 HOXC10Q9NYD6 342 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 RABGEF1Q9UJ41 708 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 RPL26L1Q9UNX3 145 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 SCAF8Q9UPN6 1271 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 CHKBQ9Y259 395 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 C3orf70A6NLC5 250 aaPredicted RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 OGTO15294 1046 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 TM9SF1O15321 606 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 MAFO75444 373 aaPredicted RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 HARSP12081 509 aaKnown RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 ATP2A2P16615 1042 aaKnown RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 PSMA2P25787 234 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 CTCFP49711 727 aaPredicted RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 GPX6P59796 221 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 SLC1A5Q15758 541 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 EXOC8Q8IYI6 725 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 NAT8LQ8N9F0 302 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 CHST13Q8NET6 341 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 C10orf82Q8WW14 230 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 RSAD2Q8WXG1 361 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 ZNF75CPQ92670 426 aaPredicted RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 TCHPQ9BT92 498 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 DHRS4Q9BTZ2 278 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 TUBB6Q9BUF5 446 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 ACSS3Q9H6R3 686 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 TRIM33Q9UPN9 1127 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 E7ENQ6 273 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 C2CD2LO14523 706 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 FAM189A1O60320 539 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 EDN1P05305 212 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 RPSAP08865 295 aaKnown RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 TROVE2P10155 538 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP4-205ENST00000431357 KRT3P12035 628 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 KDELR1P24390 212 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 HMGCS2P54868 508 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 OTUD4Q01804 1114 aaKnown RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 SLC25A11Q02978 314 aaKnown RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 ACAP1Q15027 740 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 NBPF12Q5TAG4 269 aaPredicted RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 WDR78Q5VTH9 848 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 IER5Q5VY09 327 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 ZNF772Q68DY9 489 aaPredicted RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 TXNRD3NBQ6F5E7 133 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 LVRNQ6Q4G3 990 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 ACTL9Q8TC94 416 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 SH3TC2Q8TF17 1288 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 CPT1BQ92523 772 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 HAUS1Q96CS2 278 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 MAK16Q9BXY0 300 aaKnown RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 TRIM6Q9C030 488 aaPredicted RBP11.86□□□□□ -0.51
USP4-205ENST00000431357 MTMR12Q9C0I1 747 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 VPS11Q9H270 941 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 KIF9Q9HAQ2 790 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 CYLDQ9NQC7 956 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 SAR1AQ9NR31 198 aa11.86□□□□□ -0.51
USP4-205ENST00000431357 RLFQ13129 1914 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 EP400Q96L91 3159 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 CLUHO75153 1309 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 COL11A1P12107 1806 aaPredicted RBP11.85□□□□□ -0.51
USP4-205ENST00000431357 A0A1W2PPM1 405 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 TRAFD1O14545 582 aaPredicted RBP11.85□□□□□ -0.51
USP4-205ENST00000431357 GAS2O43903 313 aaKnown RBP11.85□□□□□ -0.51
USP4-205ENST00000431357 MSCO60682 206 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 TNNC2P02585 160 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 KRT4P19013 534 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 ZNF699Q32M78 642 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 SEZ6Q53EL9 994 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 HP1BP3Q5SSJ5 553 aaPredicted RBP11.85□□□□□ -0.51
USP4-205ENST00000431357 ANKMY2Q8IV38 441 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 ZBTB8OSQ8IWT0 167 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 PALM2Q8IXS6 379 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 PDIK1LQ8N165 341 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 FAM167AQ96KS9 214 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 ACO2Q99798 780 aaKnown RBP11.85□□□□□ -0.51
USP4-205ENST00000431357 C2orf40Q9H1Z8 148 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 SLCO1B3Q9NPD5 702 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 HACL1Q9UJ83 578 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 CPSF3Q9UKF6 684 aaKnown RBP11.85□□□□□ -0.51
USP4-205ENST00000431357 GRID1Q9ULK0 1009 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 DOCK5Q9H7D0 1870 aa11.85□□□□□ -0.51
USP4-205ENST00000431357 A8MUI8 341 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 CST8O60676 142 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 DIAPH2O60879 1101 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 COQ9O75208 318 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 LRCH4O75427 683 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 WEE2P0C1S8 567 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 RFC1P35251 1148 aaPredicted RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 RPL22P35268 128 aaKnown RBP11.84□□□□□ -0.51
USP4-205ENST00000431357 TNFSF9P41273 254 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 STAT5BP51692 787 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 GRIK3Q13003 919 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 MTA1Q13330 715 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 ZNF394Q53GI3 561 aa11.84□□□□□ -0.51
USP4-205ENST00000431357 WASHC2DQ5SRD0 308 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms