RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 VPS53Q5VIR6 699 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 ICE2Q659A1 982 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 TSHZ1Q6ZSZ6 1077 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 MRIQ9BWK5 157 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 TPSD1Q9BZJ3 242 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 MS4A7Q9GZW8 240 aaPredicted RBP6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 SACM1LQ9NTJ5 587 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 COL20A1Q9P218 1284 aa6.96□□□□□ -1.3
CCDC88A-206ENST00000430086 WDR27A2RRH5 827 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 MAP4K4O95819 1239 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 PHKG2P15735 406 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 TYRP1P17643 537 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 TBX4P57082 545 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 MRPS35P82673 323 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 SAFBQ15424 915 aaKnown RBP eCLIP6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 COBLL1Q53SF7 1204 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 SESTD1Q86VW0 696 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 TOR1AIP2Q8NFQ8 470 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 PHKBQ93100 1093 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 FBXL20Q96IG2 436 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 ACTRT3Q9BYD9 372 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 XPNPEP3Q9NQH7 507 aa6.95□□□□□ -1.3
CCDC88A-206ENST00000430086 TMEM233B4DJY2 109 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 FOXN3O00409 490 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 KLRC1P26715 233 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 COL10A1Q03692 680 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 ZNF169Q14929 603 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 MGAT5BQ3V5L5 792 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 C3orf38Q5JPI3 329 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 DCAF12L1Q5VU92 463 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 MPP5Q8N3R9 675 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 PJA1Q8NG27 643 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 OR56A3Q8NH54 315 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 PDLIM2Q96JY6 352 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 STRBPQ96SI9 672 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 ALG8Q9BVK2 526 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 KLC4Q9NSK0 619 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 FOXJ2Q9P0K8 574 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 LRIT1Q9P2V4 623 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 NDRG4Q9ULP0 352 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 SSX2IPQ9Y2D8 614 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 ADGRA2Q96PE1 1338 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 SALL3Q9BXA9 1300 aa6.94□□□□□ -1.3
CCDC88A-206ENST00000430086 CCDC151A5D8V7 595 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 PYCARD-AS1I3L0S3 204 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 PQBP1O60828 265 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 ZKSCAN1P17029 563 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 HMGA2P52926 109 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 E2F2Q14209 437 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 PLA1AQ53H76 456 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 ARHGAP40Q5TG30 622 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 CCSAPQ6IQ19 270 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 DTX2Q86UW9 622 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 ZNF280BQ86YH2 543 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 CCAR1Q8IX12 1150 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 ACTRT2Q8TDY3 377 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 SPSB4Q96A44 273 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 AGAP2Q99490 1192 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 APOL5Q9BWW9 433 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 UNKQ9C0B0 810 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 ALG13Q9NP73 1137 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 ZSCAN32Q9NX65 697 aa6.93□□□□□ -1.3
CCDC88A-206ENST00000430086 ANO9A1A5B4 782 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 KRT18P05783 430 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 SLC5A1P13866 664 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 DGKEP52429 567 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 RPS16P62249 146 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 MYO1EQ12965 1108 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 TXNRD1Q16881 649 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 ZIK1Q3SY52 487 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 KAZNQ674X7 775 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 C11orf96Q7Z7L8 435 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 RAPGEF4Q8WZA2 1011 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 PBKQ96KB5 322 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 ARNT2Q9HBZ2 717 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 SERHLQ9NQF3 203 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 FAM50BQ9Y247 325 aa6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 ARID4BQ4LE39 1312 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-206ENST00000430086 VWC2LB2RUY7 222 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 ADM5C9JUS6 153 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 APAF1O14727 1248 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 PPM1DO15297 605 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 RHOP08100 348 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 CHRM2P08172 466 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 KRT17Q04695 432 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 TEDDM1Q5T9Z0 273 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 RGS7BPQ6MZT1 257 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 OLFML1Q6UWY5 402 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 GPR150Q8NGU9 434 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 TFAP2BQ92481 460 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 FKBP10Q96AY3 582 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 CXorf36Q9H7Y0 433 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 EHD3Q9NZN3 535 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 SERTAD3Q9UJW9 196 aa6.91□□□□□ -1.3
CCDC88A-206ENST00000430086 RHPN2P1A8MT19 583 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 hCG_1984214I3L0E3 225 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 CCP110O43303 1012 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 TLR5O60602 858 aa6.9□□□□□ -1.3
CCDC88A-206ENST00000430086 LMNAP02545 664 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms