RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 KRT27Q7Z3Y8 459 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 ARHGEF19Q8IW93 802 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 AMOTL1Q8IY63 956 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 OR56A1Q8NGH5 318 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 SLC2A13Q96QE2 648 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 NEU1Q99519 415 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 ZSWIM1Q9BR11 485 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 ISCA1Q9BUE6 129 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 SIL1Q9H173 461 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 TMEM140Q9NV12 185 aa4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 PA2G4Q9UQ80 394 aaKnown RBP4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 RUVBL1Q9Y265 456 aaKnown RBP4.53□□□□□ -1.68
HMGB3P20-201ENST00000417997 QSER1Q2KHR3 1735 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 TTC41PQ6P2S7 1318 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 CACNA1SQ13698 1873 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 TNRC6CQ9HCJ0 1690 aaKnown RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 ERC2O15083 957 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 NPHP1O15259 732 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 ENDOD1O94919 500 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 EYA4O95677 639 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 POMCP01189 267 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 PCCAP05165 728 aaPredicted RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 HMGB2P26583 209 aaKnown RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 BMPR1AP36894 532 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 MCAMP43121 646 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 ALDH1A3P47895 512 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 AVPR1BP47901 424 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 PDE1AP54750 535 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 EIF5P55010 431 aaKnown RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 COL10A1Q03692 680 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 PPP3CAQ08209 521 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 HLFQ16534 295 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 CCDC57Q2TAC2 916 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 ANO4Q32M45 955 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 RABL6Q3YEC7 729 aaPredicted RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 SPDYE7PQ495Y7 208 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 PARP10Q53GL7 1025 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 GJC2Q5T442 439 aaPredicted RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 ZNF529Q6P280 563 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 KRT26Q7Z3Y9 468 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 AACSQ86V21 672 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 DRC7Q8IY82 874 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 C16orf71Q8IYS4 520 aaPredicted RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 CNTROBQ8N137 903 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 PPM1NQ8N819 430 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 CCHCR1Q8TD31 782 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 OTUD7AQ8TE49 926 aaPredicted RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 RILPL2Q969X0 211 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 RNF31Q96EP0 1072 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 TOR3AQ9H497 397 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 RIOX1Q9H6W3 641 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 TESQ9UGI8 421 aaKnown RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 TRMT112Q9UI30 125 aaKnown RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 NOP58Q9Y2X3 529 aaKnown RBP4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 NOX1Q9Y5S8 564 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 ZNF609O15014 1411 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 ATRNL1Q5VV63 1379 aa4.52□□□□□ -1.69
HMGB3P20-201ENST00000417997 COL4A3Q01955 1670 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 PNPLA7Q6ZV29 1317 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 SH3TC1Q8TE82 1336 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 MAST2Q6P0Q8 1798 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 ANKRD18BA2A2Z9 1011 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 CAMTA2O94983 1202 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 SPDEFO95238 335 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 LMNAP02545 664 aaKnown RBP4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 ITGAMP11215 1152 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 FPR1P21462 350 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 TAP1Q03518 808 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 EPHA10Q5JZY3 1008 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 AGAP9Q5VTM2 703 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 RNF219Q5W0B1 726 aaPredicted RBP4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 MAPKAPK5Q8IW41 473 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 RHOT2Q8IXI1 618 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 SLC44A3Q8N4M1 653 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 KLHDC4Q8TBB5 520 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 FUBP3Q96I24 572 aaKnown RBP eCLIP4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 KAZALD1Q96I82 304 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 ADAM2Q99965 735 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 UTP14AQ9BVJ6 771 aaKnown RBP4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 ALOXE3Q9BYJ1 711 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 KLHL11Q9NVR0 708 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 SCOCQ9UIL1 159 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 NIP7Q9Y221 180 aaKnown RBP eCLIP4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 GPR45Q9Y5Y3 372 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 ACTL7AQ9Y615 435 aa4.51□□□□□ -1.69
HMGB3P20-201ENST00000417997 UBN2Q6ZU65 1347 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 SALL3Q9BXA9 1300 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 RIC1Q4ADV7 1423 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 FAM171A2A8MVW0 826 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 EYA2O00167 538 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 GPR32O75388 356 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 CDKL5O76039 1030 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 REC8O95072 547 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 FOSP01100 380 aaPredicted RBP4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 CFIP05156 583 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 VIL1P09327 827 aaKnown RBP4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 HKR1P10072 659 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 MCCP23508 829 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 SLC6A2P23975 617 aa4.5□□□□□ -1.69
HMGB3P20-201ENST00000417997 RFC4P35249 363 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms