RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ITFG1Q8TB96 612 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 KBTBD7Q8WVZ9 684 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 MRPS31Q92665 395 aaKnown RBP6.82□□□□□ -1.32
USP54-202ENST00000413442 MCRS1Q96EZ8 462 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 GBP4Q96PP9 640 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 DUSP9Q99956 384 aaKnown RBP6.82□□□□□ -1.32
USP54-202ENST00000413442 SYT15Q9BQS2 421 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 BCO2Q9BYV7 579 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 IKZF4Q9H2S9 585 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 ATXN3LQ9H3M9 355 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 FBXO44Q9H4M3 255 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 C8orf33Q9H7E9 229 aaPredicted RBP6.82□□□□□ -1.32
USP54-202ENST00000413442 GDPD2Q9HCC8 539 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 ARMCX3Q9UH62 379 aaPredicted RBP6.82□□□□□ -1.32
USP54-202ENST00000413442 DACH1Q9UI36 760 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 SLC27A5Q9Y2P5 690 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 NUMBLQ9Y6R0 609 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 TSC2P49815 1807 aa6.82□□□□□ -1.32
USP54-202ENST00000413442 ZNF638Q14966 1978 aaKnown RBP6.82□□□□□ -1.32
USP54-202ENST00000413442 NUP210Q8TEM1 1887 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 DOCK6Q96HP0 2047 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 TTC28Q96AY4 2481 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 ZNF263O14978 683 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 VNN2O95498 520 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 USP17L7P0C7H9 530 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 PRR29P0C7W0 189 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 CCDC192P0DO97 292 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 GABRR2P28476 465 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 ERCC5P28715 1186 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 AVPR1AP37288 418 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 GRIK1P39086 918 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 RPS9P46781 194 aaKnown RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 PSEN1P49768 467 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 WNT7BP56706 349 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 SLC8A3P57103 927 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 INCA1Q0VD86 236 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 NR1H3Q13133 447 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 MORC3Q14149 939 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 PPP2R5DQ14738 602 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 PREPLQ4J6C6 727 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 SLC44A4Q53GD3 710 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 SNX30Q5VWJ9 437 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 TDRD10Q5VZ19 366 aaKnown RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 ANKRD40Q6AI12 368 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 PARM1Q6UWI2 310 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 ZNF852Q6ZMS4 543 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 DENND5BQ6ZUT9 1274 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 HFE2Q6ZVN8 426 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 DDX42Q86XP3 938 aaKnown RBP eCLIP6.81□□□□□ -1.32
USP54-202ENST00000413442 TMC8Q8IU68 726 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 YAF2Q8IY57 180 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 NUP93Q8N1F7 819 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 SYNPOQ8N3V7 929 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 B3GALNT2Q8NCR0 500 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 STKLD1Q8NE28 680 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 ZSWIM2Q8NEG5 633 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 ZSCAN18Q8TBC5 510 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 FGF14Q92915 247 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 PGLYRP2Q96PD5 576 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 SLITRK1Q96PX8 696 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 SEPT5Q99719 369 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 DDX23Q9BUQ8 820 aaKnown RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 TTLL2Q9BWV7 592 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 NT5C1AQ9BXI3 368 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 FAM126AQ9BYI3 521 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 DNAJC25Q9H1X3 360 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 CSNK1G1Q9HCP0 422 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 TDP1Q9NUW8 608 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 TMEM51Q9NW97 253 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 HCFC1R1Q9NWW0 138 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 RAB20Q9NX57 234 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 ABI2Q9NYB9 513 aaPredicted RBP6.81□□□□□ -1.32
USP54-202ENST00000413442 IL37Q9NZH6 218 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 SIT1Q9Y3P8 196 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 GREB1Q4ZG55 1949 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 CUL9Q8IWT3 2517 aa6.81□□□□□ -1.32
USP54-202ENST00000413442 PTPRJQ12913 1337 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 PTPRDP23468 1912 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 KANSL1LA0AUZ9 987 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 FAM92AA1XBS5 289 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 MYBPHLA2RUH7 354 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 SLC38A8A6NNN8 435 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 TULP1O00294 542 aaPredicted RBP6.8□□□□□ -1.32
USP54-202ENST00000413442 SLC9A3R1O14745 358 aaPredicted RBP6.8□□□□□ -1.32
USP54-202ENST00000413442 MOSPD3O75425 235 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 VNN1O95497 513 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 HLA-DRAP01903 254 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 ASGR2P07307 311 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 PDGFRBP09619 1106 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 OR4Q2P0C623 313 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 HMGA1P17096 107 aaKnown RBP6.8□□□□□ -1.32
USP54-202ENST00000413442 ATF6P18850 670 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 RFX1P22670 979 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 CYP2F1P24903 491 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 LMO2P25791 158 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 PIK3CAP42336 1068 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 CASP4P49662 377 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 MXI1P50539 228 aa6.8□□□□□ -1.32
USP54-202ENST00000413442 TUBP50607 506 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms