RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 EFHC2Q5JST6 749 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 YTHDF3Q7Z739 585 aaKnown RBP19.38■□□□□ 0.69
USP48-204ENST00000400301 FAM167BQ9BTA0 163 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 ST6GALNAC4Q9H4F1 302 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 BFARQ9NZS9 450 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 STXBP5LQ9Y2K9 1186 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 SPAG6O75602 509 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 HSPA4LO95757 839 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 SNRPAP09012 282 aaKnown RBP19.38■□□□□ 0.69
USP48-204ENST00000400301 VDRP11473 427 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 TYK2P29597 1187 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 RPL7AP62424 266 aaKnown RBP19.38■□□□□ 0.69
USP48-204ENST00000400301 R3HDM1Q15032 1099 aaKnown RBP19.38■□□□□ 0.69
USP48-204ENST00000400301 CNGA2Q16280 664 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 TTC27Q6P3X3 843 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 LONP2Q86WA8 852 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 ZNF560Q96MR9 790 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 FAM161BQ96MY7 647 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 PAFAH2Q99487 392 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 BCAP29Q9UHQ4 241 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 EIF4E1BA6NMX2 242 aaKnown RBP19.38■□□□□ 0.69
USP48-204ENST00000400301 TRIM49D1C9J1S8 452 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 OPLAHO14841 1288 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 LMNAP02545 664 aaKnown RBP19.38■□□□□ 0.69
USP48-204ENST00000400301 OR6J1Q8NGC5 347 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 MANSC1Q9H8J5 431 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 DPP3Q9NY33 737 aa19.38■□□□□ 0.69
USP48-204ENST00000400301 H3BRJ5 948 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 TARSP26639 723 aaKnown RBP19.37■□□□□ 0.69
USP48-204ENST00000400301 TAS2R40P59535 323 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ANKRD13AQ8IZ07 590 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 TNIP3Q96KP6 325 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 FAM111AQ96PZ2 611 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 A0A087WZ62 844 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 GHRP10912 638 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 DRD4P21917 467 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 RFX8Q6ZV50 586 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ACOT1Q86TX2 421 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 HIPK4Q8NE63 616 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 RXFP2Q8WXD0 754 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 CCT6BQ92526 530 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 FDXACB1Q9BRP7 624 aaPredicted RBP19.37■□□□□ 0.69
USP48-204ENST00000400301 PCMTD2Q9NV79 361 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 SSTR1P30872 391 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ATXN2LQ8WWM7 1075 aaKnown RBP19.37■□□□□ 0.69
USP48-204ENST00000400301 TMEM176AQ96HP8 235 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 CNPY3Q9BT09 278 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 C10orf88Q9H8K7 445 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ZFATQ9P243 1243 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ITGB4P16144 1822 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 MAP3K7O43318 606 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ZNF862O60290 1169 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 VTNP04004 478 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ETS1P14921 441 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 RTP1P59025 263 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 LAMC2Q13753 1193 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 QPCTQ16769 361 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 GLRA4Q5JXX5 417 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 CATSPERGQ6ZRH7 1159 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 EXOC3L1Q86VI1 746 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 LRRC6Q86X45 466 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 PGBD4Q96DM1 585 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 ATXN7L3BQ96GX2 97 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 CPB2Q96IY4 423 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 AGAP3Q96P47 875 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 SAE1Q9UBE0 346 aaPredicted RBP19.37■□□□□ 0.69
USP48-204ENST00000400301 SLC24A2Q9UI40 661 aa19.37■□□□□ 0.69
USP48-204ENST00000400301 NOCTQ9UK39 431 aaKnown RBP19.37■□□□□ 0.69
USP48-204ENST00000400301 GIPC1O14908 333 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 CHRNB2P17787 502 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 ZC3H3Q8IXZ2 948 aaKnown RBP19.36■□□□□ 0.69
USP48-204ENST00000400301 FRMD8P1Q9BZ68 369 aaPredicted RBP19.36■□□□□ 0.69
USP48-204ENST00000400301 UBR2Q8IWV8 1755 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 DYNC1LI2O43237 492 aaPredicted RBP19.36■□□□□ 0.69
USP48-204ENST00000400301 GPC4O75487 556 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 ERFP50548 548 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 SEPT6Q14141 434 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 PKN2Q16513 984 aaKnown RBP19.36■□□□□ 0.69
USP48-204ENST00000400301 ZCCHC9Q8N567 271 aaKnown RBP19.36■□□□□ 0.69
USP48-204ENST00000400301 WWP1Q9H0M0 922 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 IRS2Q9Y4H2 1338 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 ZMYM2Q9UBW7 1377 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 O00370 1275 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 ACKR2O00590 384 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 OPHN1O60890 802 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 MX2P20592 715 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 CAPSQ13938 189 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 AMHR2Q16671 573 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 NFASCO94856 1347 aa19.36■□□□□ 0.69
USP48-204ENST00000400301 SPATA31C2B4DYI2 1134 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 NPTXRO95502 500 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 EIF4BP23588 611 aaKnown RBP19.35■□□□□ 0.69
USP48-204ENST00000400301 TNFSF9P41273 254 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 THOC5Q13769 683 aaKnown RBP19.35■□□□□ 0.69
USP48-204ENST00000400301 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.35■□□□□ 0.69
USP48-204ENST00000400301 CLMNQ96JQ2 1002 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 SMYD3Q9H7B4 428 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 ANGPTL2Q9UKU9 493 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 FIS1Q9Y3D6 152 aa19.35■□□□□ 0.69
USP48-204ENST00000400301 MYO5AQ9Y4I1 1855 aaKnown RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms