RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 ZNF394Q53GI3 561 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 C1orf146Q5VVC0 180 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 CDC42EP5Q6NZY7 148 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 MFSD7Q6UXD7 560 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 MCOLN2Q8IZK6 566 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ZCCHC9Q8N567 271 aaKnown RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ANKRD27Q96NW4 1050 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 FNBP1Q96RU3 617 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 NDNQ99608 321 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 PSMC3IPQ9P2W1 217 aaPredicted RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 DDTLA6NHG4 134 aaPredicted RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 LPXNO60711 386 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 MT-ND3P03897 115 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 MAN1A1P33908 653 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 NT5C2P49902 561 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 EPHB1P54762 984 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 RTP1P59025 263 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 RPL7AP62424 266 aaKnown RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 DEUP1Q05D60 604 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 RASA2Q15283 850 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 CCNG2Q16589 344 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 CTC1Q2NKJ3 1217 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 SMTNL2Q2TAL5 461 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 WDR72Q3MJ13 1102 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 PLA2G4FQ68DD2 849 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 CERS5Q8N5B7 392 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 SHC3Q92529 594 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 MBOAT7Q96N66 472 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ACCSQ96QU6 501 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 PAFAH2Q99487 392 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 SLC13A1Q9BZW2 595 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 IKBKGQ9Y6K9 419 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 IRS2Q9Y4H2 1338 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 SIGLEC16A6NMB1 481 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ZWINTO95229 277 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 FOSP01100 380 aaPredicted RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 CLEC16AQ2KHT3 1053 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 TBC1D25Q3MII6 688 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ANKRD22Q5VYY1 191 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 KRT39Q6A163 491 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 TXNRD3NBQ6F5E7 133 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 CENPUQ71F23 418 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 PYDC1Q8WXC3 89 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 RBM41Q96IZ5 413 aaKnown RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 RHBDL2Q9NX52 303 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 RAB20Q9NX57 234 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 CHMP2BQ9UQN3 213 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 MYH14Q7Z406 1995 aaKnown RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 SBF2Q86WG5 1849 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 ATP8B3O60423 1300 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 ANKRD36CQ5JPF3 1778 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 IPO5O00410 1097 aaKnown RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 TCEA3O75764 348 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 GH2P01242 217 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 CYP1A1P04798 512 aaPredicted RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 SPATA31D3P0C874 917 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 NOVP48745 357 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 NFX1Q12986 1120 aaKnown RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 PDCD2Q16342 344 aaPredicted RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 CNPY1Q3B7I2 92 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 MSS51Q4VC12 460 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 SPATA31D4Q6ZUB0 917 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 SH3BP5LQ7L8J4 393 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 MIER3Q7Z3K6 550 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 RHOT1Q8IXI2 618 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 BBOF1Q8ND07 529 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 HELQQ8TDG4 1101 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 BICD1Q96G01 975 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 DNAJC1Q96KC8 554 aaKnown RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 IQCGQ9H095 443 aaKnown RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 CLIC5Q9NZA1 410 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 ACTL7BQ9Y614 415 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 KAT6AQ92794 2004 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 IGLV3-22A0A075B6J6 115 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 DNALI1O14645 258 aaPredicted RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 MAGEB2O15479 319 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 TYROBPO43914 113 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 PSMD10O75832 226 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 FAM155BO75949 473 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 DKK1O94907 266 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 BASP1P80723 227 aaKnown RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 HIF1AQ16665 826 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 KCNT1Q5JUK3 1230 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 SV2AQ7L0J3 742 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 NLRX1Q86UT6 975 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 ARID3BQ8IVW6 561 aaPredicted RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 FBXL13Q8NEE6 735 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 CYP4F11Q9HBI6 524 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 HOMER2Q9NSB8 354 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 TCEAL9Q9UHQ7 104 aa10.36□□□□□ -0.75
PTCHD4-202ENST00000398738 E5RJQ4 531 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 PRPF4O43172 522 aaKnown RBP eCLIP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 CIB2O75838 187 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 OR6B1O95007 311 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 PGM3O95394 542 aa10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 HARSP12081 509 aaKnown RBP10.35□□□□□ -0.75
PTCHD4-202ENST00000398738 TNNI1P19237 187 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms