RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 BANPQ8N9N5 519 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 TMEM35BQ8NCS4 154 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 FBXO36Q8NEA4 188 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 DEPTORQ8TB45 409 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 TFAP2BQ92481 460 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ZBED3Q96IU2 234 aaPredicted RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ACSS3Q9H6R3 686 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 TLE6Q9H808 572 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ALG13Q9NP73 1137 aaKnown RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 DDX56Q9NY93 547 aaKnown RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 CCDC189A1A4V9 331 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 CST8O60676 142 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 RFC1P35251 1148 aaPredicted RBP13.34□□□□□ -0.27
SHMT1-205ENST00000395684 RPL22P35268 128 aaKnown RBP13.34□□□□□ -0.27
SHMT1-205ENST00000395684 NAMPTP43490 491 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 TRIM68Q6AZZ1 485 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 PCGF5Q86SE9 256 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 KIAA0319LQ8IZA0 1049 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 NIPA2Q8N8Q9 360 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 ATP11CQ8NB49 1132 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 NSUN6Q8TEA1 469 aaKnown RBP13.34□□□□□ -0.27
SHMT1-205ENST00000395684 DCAKDQ8WVC6 231 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 TEPSINQ96N21 525 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 ZWILCHQ9H900 591 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 CISHQ9NSE2 258 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 FETUBQ9UGM5 382 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 LNPEPQ9UIQ6 1025 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 DOCK5Q9H7D0 1870 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 TMEM63AO94886 807 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 LSM8O95777 96 aaKnown RBP13.34□□□□□ -0.27
SHMT1-205ENST00000395684 SUPT20HL2P0C7V6 817 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 PHBP35232 272 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 ARL2P36404 184 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 ARL4CP56559 192 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 MYL6P60660 151 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 TGFB2P61812 414 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 SLC25A11Q02978 314 aaKnown RBP13.34□□□□□ -0.27
SHMT1-205ENST00000395684 SUPT20HL1Q3ZLR7 823 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 WASHC2DQ5SRD0 308 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 FYB2Q5VWT5 728 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 ANKRD27Q96NW4 1050 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 DHX33Q9H6R0 707 aaKnown RBP13.34□□□□□ -0.27
SHMT1-205ENST00000395684 TJP2Q9UDY2 1190 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 AGTPBP1Q9UPW5 1226 aa13.34□□□□□ -0.27
SHMT1-205ENST00000395684 PSME4Q14997 1843 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 E7ENQ6 273 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 CD48P09326 243 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 WEE2P0C1S8 567 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 PTDSS1P48651 473 aaKnown RBP13.33□□□□□ -0.28
SHMT1-205ENST00000395684 NRLP54845 237 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 SEPT7Q16181 437 aaKnown RBP13.33□□□□□ -0.28
SHMT1-205ENST00000395684 SNRNP48Q6IEG0 339 aaKnown RBP13.33□□□□□ -0.28
SHMT1-205ENST00000395684 CAPRIN2Q6IMN6 1127 aaKnown RBP13.33□□□□□ -0.28
SHMT1-205ENST00000395684 RFWD3Q6PCD5 774 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 LRRC6Q86X45 466 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 UNC45BQ8IWX7 931 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 ZNF398Q8TD17 642 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 KCNN1Q92952 543 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 IMPG2Q9BZV3 1241 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 MTMR12Q9C0I1 747 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 MANSC1Q9H8J5 431 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 SAR1AQ9NR31 198 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 KCNG1Q9UIX4 513 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 A0A0G2JND7 137 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 SPATA31C2B4DYI2 1134 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 E7ESA3 106 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 LRCH4O75427 683 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 MARK3P27448 753 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 KHDC1Q4VXA5 237 aaKnown RBP13.33□□□□□ -0.28
SHMT1-205ENST00000395684 REPS2Q8NFH8 660 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 JOSD2Q8TAC2 188 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 CADM1Q9BY67 442 aaKnown RBP13.33□□□□□ -0.28
SHMT1-205ENST00000395684 VPS11Q9H270 941 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 SLC24A3Q9HC58 644 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 CORO1CQ9ULV4 474 aaPredicted RBP13.33□□□□□ -0.28
SHMT1-205ENST00000395684 KIAA1217Q5T5P2 1943 aa13.33□□□□□ -0.28
SHMT1-205ENST00000395684 A6NHS1 94 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 LIN7AO14910 233 aaPredicted RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 TM9SF1O15321 606 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 UPP2O95045 317 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 TROVE2P10155 538 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 EIF4BP23588 611 aaKnown RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 PSMA2P25787 234 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 RXRBP28702 533 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 BBS9Q3SYG4 887 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 FAM182AQ5T1J6 154 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 POLNQ7Z5Q5 900 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 IGDCC3Q8IVU1 814 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 PALM2Q8IXS6 379 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 PRR11Q96HE9 360 aaPredicted RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 ZNF518BQ9C0D4 1074 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 KCNK13Q9HB14 408 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 ARL8BQ9NVJ2 186 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 HEY2Q9UBP5 337 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 MAFBQ9Y5Q3 323 aaPredicted RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 MYH9P35579 1960 aaKnown RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 CFAP69A5D8W1 941 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 NDC80O14777 642 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 FAM189A1O60320 539 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 LUC7L3O95232 432 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms