RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 WDR72Q3MJ13 1102 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 ARTNQ5T4W7 220 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SPOPLQ6IQ16 392 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SYCE2Q6PIF2 218 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 CCDC149Q6ZUS6 474 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 GPR149Q86SP6 731 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 TMEM110Q86TL2 294 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 PSMG2Q969U7 264 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 DUSP16Q9BY84 665 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 CRISPLD1Q9H336 500 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 HMGXB4Q9UGU5 601 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 FHOD1Q9Y613 1164 aa7.47□□□□□ -1.21
LIMA1-202ENST00000394943 SSU72P8A0A1W2PR75 194 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 MOSPD3O75425 235 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 GABBR2O75899 941 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 TPM2P07951 284 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 DDX6P26196 483 aaKnown RBP eCLIP7.46□□□□□ -1.21
LIMA1-202ENST00000394943 DCAF17Q5H9S7 520 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-202ENST00000394943 DSTYKQ6XUX3 929 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 TRIM72Q6ZMU5 477 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 RNF19BQ6ZMZ0 732 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 C4orf50Q6ZRC1 276 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 CCDC186Q7Z3E2 898 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 EEF2KMTQ96G04 330 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 HSFY1Q96LI6 401 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 IMPG2Q9BZV3 1241 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 ADAM7Q9H2U9 754 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 IL21Q9HBE4 155 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 ALG13Q9NP73 1137 aaKnown RBP7.46□□□□□ -1.21
LIMA1-202ENST00000394943 OBP2AQ9NY56 170 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 EPS15L1Q9UBC2 864 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 DNAJC12Q9UKB3 198 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.46□□□□□ -1.214e-6■■■■□ 22
LIMA1-202ENST00000394943 SNX9Q9Y5X1 595 aa7.46□□□□□ -1.21
LIMA1-202ENST00000394943 ATF6P18850 670 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 GPD2P43304 727 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 MLLT6P55198 1093 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-202ENST00000394943 SYCP1Q15431 976 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 FILIP1LQ4L180 1135 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 TCEAL5Q5H9L2 206 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 SPECC1LQ69YQ0 1117 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 TMEM150AQ86TG1 271 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 TMEM139Q8IV31 216 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 WDTC1Q8N5D0 677 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 RNF169Q8NCN4 708 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 EPS8L1Q8TE68 723 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 VCPIP1Q96JH7 1222 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PANX2Q96RD6 677 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 TMEM209Q96SK2 561 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PRKD2Q9BZL6 878 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 XPO4Q9C0E2 1151 aaKnown RBP7.46□□□□□ -1.22
LIMA1-202ENST00000394943 KCND1Q9NSA2 647 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 TMEM30AQ9NV96 361 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 BZW2Q9Y6E2 419 aaKnown RBP7.46□□□□□ -1.22
LIMA1-202ENST00000394943 NT5C1B-RDH14C9J2C7 533 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 GFRA2O00451 464 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 IGLV3-25P01717 112 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PBX3P40426 434 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 TUFMP49411 452 aaKnown RBP7.46□□□□□ -1.22
LIMA1-202ENST00000394943 UBASH3AP57075 661 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 CTXN3Q4LDR2 81 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 FAM35AQ86V20 835 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PHF13Q86YI8 300 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-202ENST00000394943 RIN2Q8WYP3 895 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-202ENST00000394943 NT5C3BQ969T7 300 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PCED1BQ96HM7 432 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 FAM84AQ96KN4 292 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 ARID3AQ99856 593 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PI4K2AQ9BTU6 479 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 DPEP3Q9H4B8 488 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 SCML2Q9UQR0 700 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PRG3Q9Y2Y8 225 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-202ENST00000394943 PCDHB5Q9Y5E4 795 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 INSL5Q9Y5Q6 135 aa7.46□□□□□ -1.22
LIMA1-202ENST00000394943 CHD7Q9P2D1 2997 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 BTNL10A8MVZ5 291 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 FERP16591 822 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 HADHBP55084 474 aaKnown RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 CENPCQ03188 943 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 SMAD4Q13485 552 aaKnown RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 TPD52L1Q16890 204 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 PPP1R15BQ5SWA1 713 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 WDR59Q6PJI9 974 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 PRSS55Q6UWB4 352 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 CLEC20AQ6ZU45 233 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ZDHHC17Q8IUH5 632 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ZDHHC14Q8IZN3 488 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 TFAP2BQ92481 460 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 KAT5Q92993 513 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 SMARCD1Q96GM5 515 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 SMOQ99835 787 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 LSM14BQ9BX40 385 aaKnown RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 PRKAG3Q9UGI9 489 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ANHXE9PGG2 379 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 FOXN3O00409 490 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-202ENST00000394943 TBX10O75333 385 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 TADA3O75528 432 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 F11P03951 625 aa7.45□□□□□ -1.22
LIMA1-202ENST00000394943 ERBB2P04626 1255 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms