RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PABPC3Q9H361 631 aaKnown RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 TMBIM4Q9HC24 238 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 KAT6AQ92794 2004 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 RRN3P2A6NIE6 340 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 PDGFRAP16234 1089 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 IL1R2P27930 398 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 FKBP1BP68106 108 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 GOLGA7BQ2TAP0 167 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 PPP1R26Q5T8A7 1209 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 EXD1Q8NHP7 514 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 GPATCH2LQ9NWQ4 482 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 PSD3Q9NYI0 1048 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 STRIP2Q9ULQ0 834 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 BARX2Q9UMQ3 279 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 NRCAMQ92823 1304 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 RBM47A0AV96 593 aaKnown RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 H0YGN5 161 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 NDUFAB1O14561 156 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 RGS16O15492 202 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 CST8O60676 142 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 TJP3O95049 919 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 ITGBL1O95965 494 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 PSEN2P49810 448 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 NRLP54845 237 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 BYSLQ13895 437 aaKnown RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 PIGHQ14442 188 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF618Q5T7W0 954 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF467Q7Z7K2 595 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 KATNAL2Q8IYT4 538 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 RCOR2Q8IZ40 523 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 MAIP1Q8WWC4 291 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 ZFP42Q96MM3 310 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 SLITRK1Q96PX8 696 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 NFKBIZQ9BYH8 718 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 DPEP3Q9H4B8 488 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 FEZ2Q9UHY8 353 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-203ENST00000394269 NFS1Q9Y697 457 aa11.73□□□□□ -0.53
TCOF1-203ENST00000394269 A6NJR5 290 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 E7EVH7 732 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ARSEP51690 589 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 IFI35P80217 286 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 GPS1Q13098 491 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 HADHQ16836 314 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 FAM187BQ17R55 369 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 CCDC142Q17RM4 750 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 IZUMO3Q5VZ72 239 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 SPOCD1Q6ZMY3 1216 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ZC3H18Q86VM9 953 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 RFX6Q8HWS3 928 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 LINC01465Q8N7H1 131 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 SEC14L1Q92503 715 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 EMID1Q96A84 441 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ARHGAP39Q9C0H5 1083 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ADAMTS10Q9H324 1103 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 SLC45A1Q9Y2W3 748 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 LOC102724159A0A0B4J2E5 919 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 MYADML2A6NDP7 307 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 HMGB1P1B2RPK0 211 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 PPFIA2O75334 1257 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 PIAS1O75925 651 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 LCP1P13796 627 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 PWP2Q15269 919 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 FSCN1Q16658 493 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 BEST2Q8NFU1 509 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 MGARPQ8TDB4 240 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 GRK7Q8WTQ7 553 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 SNF8Q96H20 258 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 RBM41Q96IZ5 413 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 CFAP57Q96MR6 1250 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 BCO2Q9BYV7 579 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF518BQ9C0D4 1074 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 MLXIPLQ9NP71 852 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 HESX1Q9UBX0 185 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 GPR32O75388 356 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 LRCH4O75427 683 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 CCDC130P13994 396 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 DARSP14868 501 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ACAT1P24752 427 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 LMO2P25791 158 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 MIPP30301 263 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 GPD2P43304 727 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 MMRN1Q13201 1228 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 SNX17Q15036 470 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 PPP6R3Q5H9R7 873 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 PMF1Q6P1K2 205 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF410Q86VK4 478 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 XYLT1Q86Y38 959 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 RXFP2Q8WXD0 754 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 MAK16Q9BXY0 300 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 CDC42EP4Q9H3Q1 356 aaKnown RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 ITGA11Q9UKX5 1188 aa11.72□□□□□ -0.53
TCOF1-203ENST00000394269 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 TIMM13Q9Y5L4 95 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-203ENST00000394269 SIGLEC16A6NMB1 481 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 MEIS3P2A8K0S8 358 aa11.71□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF865P0CJ78 1059 aaPredicted RBP11.71□□□□□ -0.53
TCOF1-203ENST00000394269 VDRP11473 427 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms