RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ZNF626Q68DY1 528 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PTF1AQ7RTS3 328 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 FANCBQ8NB91 859 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SEMA6DQ8NFY4 1073 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 BRIX1Q8TDN6 353 aaKnown RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 STAG1Q8WVM7 1258 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 ATRIPQ8WXE1 791 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 GLG1Q92896 1179 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 HPS3Q969F9 1004 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 CAMKK2Q96RR4 588 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SIK2Q9H0K1 926 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 KMT5AQ9NQR1 393 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 DDX56Q9NY93 547 aaKnown RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF70Q9UC06 446 aaPredicted RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 TBC1D30Q9Y2I9 924 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SPEF1Q9Y4P9 236 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 AP1G1O43747 822 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 CYP2D6P10635 497 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 ADORA2AP29274 412 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PDE1AP54750 535 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 UCP3P55916 312 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SOX10P56693 466 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 KLF9Q13886 244 aaPredicted RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 LLGL1Q15334 1064 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PROSER3Q2NL68 480 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 ZIK1Q3SY52 487 aaPredicted RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 MTX3Q5HYI7 312 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 CEP78Q5JTW2 689 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PRAMEF17Q5VTA0 474 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 ICE2Q659A1 982 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 LAYNQ6UX15 382 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SLC29A4Q7RTT9 530 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 C1QL2Q7Z5L3 287 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 LRRC71Q8N4P6 559 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PPP1R35Q8TAP8 253 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SMG7Q92540 1137 aaKnown RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 MAP3K14Q99558 947 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SLC12A5Q9H2X9 1139 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 FNDC1Q4ZHG4 1894 aaPredicted RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 EEFSECP57772 596 aaKnown RBP2.81□□□□□ -1.96
VPS13A-206ENST00000376646 IQCB1Q15051 598 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 EZH2Q15910 746 aaKnown RBP2.81□□□□□ -1.96
VPS13A-206ENST00000376646 ETFDHQ16134 617 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 LY6KQ17RY6 165 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 PCID2Q5JVF3 399 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 IFIT1BQ5T764 474 aaKnown RBP2.81□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF618Q5T7W0 954 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 DEPDC1Q5TB30 811 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 SUMO4Q6EEV6 95 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 SLC2A7Q6PXP3 512 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 DPY19L3Q6ZPD9 716 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 YTHDF3Q7Z739 585 aaKnown RBP2.81□□□□□ -1.96
VPS13A-206ENST00000376646 DTX2Q86UW9 622 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 TPH2Q8IWU9 490 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 XAGE5Q8WWM1 108 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 DUSP22Q9NRW4 184 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 NDRG4Q9ULP0 352 aaKnown RBP2.81□□□□□ -1.96
VPS13A-206ENST00000376646 STXBP5LQ9Y2K9 1186 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 UTP18Q9Y5J1 556 aaKnown RBP eCLIP2.81□□□□□ -1.96
VPS13A-206ENST00000376646 A1L4Q6 167 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 TMEM233B4DJY2 109 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 QSOX1O00391 747 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 SOAT2O75908 522 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 NXPH3O95157 252 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 EPHB2P29323 1055 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 ALDH9A1P49189 494 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 LOXL3P58215 753 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 RAB1AP62820 205 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 ATAT1Q5SQI0 421 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF425Q6IV72 752 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 CEP85Q6P2H3 762 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 CYP2W1Q8TAV3 490 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 DDX17Q92841 729 aaKnown RBP2.81□□□□□ -1.96
VPS13A-206ENST00000376646 CDK5RAP3Q96JB5 506 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 MRGPRX1Q96LB2 322 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 PTDSS2Q9BVG9 487 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 C1QTNF7Q9BXJ2 289 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 RHOBTB2Q9BYZ6 727 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 CXorf36Q9H7Y0 433 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 XPR1Q9UBH6 696 aa2.81□□□□□ -1.96
VPS13A-206ENST00000376646 SLC16A3O15427 465 aaKnown RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 ALDH1L1O75891 902 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 ABLIM3O94929 683 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 LATS1O95835 1130 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 CSF1RP07333 972 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 PDGFRBP09619 1106 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 CT47B1P0C2W7 299 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 ATXN1LP0C7T5 689 aaKnown RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 SLC11A2P49281 568 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 EMC10Q5UCC4 262 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 CHSY1Q86X52 802 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 SLC15A4Q8N697 577 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 DIS3LQ8TF46 1054 aaKnown RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 TMEM171Q8WVE6 324 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 FAM167AQ96KS9 214 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 RTFDC1Q9BY42 306 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 GLOD4Q9HC38 313 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 SARS2Q9NP81 518 aaKnown RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 PDGFCQ9NRA1 345 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 FLRT1Q9NZU1 646 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms